Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09530 89 / 2e-20 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G36930 88 / 3e-20 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 85 / 4e-20 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G20180 85 / 4e-19 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G00050 81 / 8e-18 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G59060 75 / 1e-15 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT2G43010 75 / 1e-15 bHLH SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 (.1.2) AT4G28790 74 / 2e-15 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G28800 73 / 6e-15 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G28815 71 / 1e-14 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024811 [exp] 96 / 3e-23 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029805 [exp] 89 / 2e-20 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 89 / 2e-20 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10022833 [exp] 88 / 6e-20 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 88 / 7e-20 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10003471 [exp] 84 / 6e-19 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 84 / 1e-18 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028175 [exp] 78 / 2e-16 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018724 [exp] 71 / 1e-14 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139700 [exp] 100 / 1e-24 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G055400 [exp] 92 / 1e-21 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G001800 [exp] 90 / 1e-20 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G207200 [exp] 90 / 1e-20 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.002G124400 [exp] 87 / 3e-20 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G001300 [exp] 88 / 7e-20 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G252800 [exp] 87 / 1e-19 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.014G025800 [exp] 85 / 2e-19 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G143300 [exp] 81 / 1e-17 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 80 / 3e-17 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041592 pacid=23146711 polypeptide=Lus10041592 locus=Lus10041592.g ID=Lus10041592.BGIv1.0 annot-version=v1.0 ATGGCAGATTCTTCTCTGAACAGAAGTAACTTCTTCGGTTCCCACCACCATCATCATCATCCTAATGCTTCCTCCAACGACGACGAAATATTACTCTTCC TACACCAATTTCTACTCCGTCATCCTCCTTCCACCGAACCGCCGCCCCAATGGCTTTCTCAATCTTCTCCGACTAATAATAATAATAACAATATGTACAA ACCCTGGAACTCTGTTTCTGATGCTTCCGATGGCATCCCCTTTTCTGGGACTGGGAGCGGCTGCCATGACCCCGAGGAATATGACGATGCAAGCGAGGAA GCTGCGGTTGACGATGAGTTGCAGAAGCCGCCGCCGCGTAATTCGTCATCGAAGAGAACCCGATCCGCCGATGTTCACAACTTATCAGAAAAGAGGCGTA GGAGTAGAATTAATGAGAAGATGAAAGCTCTGCAAAAGCTCATCCCTAACTCCAGCAAGACCGACAAAGCTTCAATGCTTGATGAAGCAATTGAGTACCT GAAGCAGCTTCAGCTCCAAGTTCAGCAAAAGGGAAGACTAAGTAACAAACTTCATTTCTCTGATGATGATGATGATGATGATGAGGTGGTGGTTTCATGT TTATCTCTTCTCTTGCTCCTTCCAACTCGGCAGCAGCAGCAGCCAGCAGGACTATTATATATGACTTGA
AA sequence Show only first row Show all	>Lus10041592 pacid=23146711 polypeptide=Lus10041592 locus=Lus10041592.g ID=Lus10041592.BGIv1.0 annot-version=v1.0 MADSSLNRSNFFGSHHHHHHPNASSNDDEILLFLHQFLLRHPPSTEPPPQWLSQSSPTNNNNNNMYKPWNSVSDASDGIPFSGTGSGCHDPEEYDDASEE AAVDDELQKPPPRNSSSKRTRSADVHNLSEKRRRSRINEKMKALQKLIPNSSKTDKASMLDEAIEYLKQLQLQVQQKGRLSNKLHFSDDDDDDDEVVVSC LSLLLLLPTRQQQQPAGLLYMT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	0	1
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	3.0	0.8655
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	6.8	0.8384
					Lus10035120 [exp]	6.9	0.8307
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	7.9	0.8068
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	8.2	0.8229
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	9.8	0.7590
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	11.4	0.8196
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	17.0	0.7568
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	17.7	0.8118
AT3G45740			hydrolase family protein / HAD...		Lus10001969 [exp]	21.4	0.6835

Compare expression of checked genes

Lus10041592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.