Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02630 536 / 0 Protein kinase superfamily protein (.1) AT1G01540 531 / 0 Protein kinase superfamily protein (.1.2) AT4G01330 530 / 0 Protein kinase superfamily protein (.1.2) AT4G34500 452 / 2e-156 Protein kinase superfamily protein (.1) AT3G59110 452 / 4e-155 Protein kinase superfamily protein (.1) AT2G42960 436 / 4e-149 Protein kinase superfamily protein (.1) AT5G18500 414 / 7e-141 Protein kinase superfamily protein (.1.2) AT1G09440 411 / 6e-140 Protein kinase superfamily protein (.1) AT1G56720 412 / 1e-139 Protein kinase superfamily protein (.1.2.3) AT3G17420 405 / 1e-137 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012664 [exp] 671 / 0 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 574 / 0 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 574 / 0 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 514 / 4e-180 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 496 / 8e-173 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001423 [exp] 446 / 5e-153 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 447 / 1e-151 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 439 / 3e-150 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 452 / 6e-150 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026100 [exp] 572 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.005G139500 [exp] 541 / 0 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 532 / 0 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G059000 [exp] 475 / 4e-164 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 471 / 1e-162 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 459 / 1e-158 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 458 / 5e-158 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 449 / 4e-154 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 423 / 3e-144 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G003700 [exp] 423 / 5e-144 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041593 pacid=23146966 polypeptide=Lus10041593 locus=Lus10041593.g ID=Lus10041593.BGIv1.0 annot-version=v1.0 ATGGTTATGACCGACCAGCTATCAAGACCCACTTCAATTTTCGGACTCAAGCTATGGGTTATCGTCGGCGTCTCTGCCGGCGCTTCCTTCGTAATTCTCC TCTTCCTTATCACTCTCTGGCTCGCCTCCAAGCGATCCTCCAACCGCTCCGCTTCCGATGTCAACCGCCACCCAATCCCAACCGTTTCCAAGGAGATCCA GGAAATTAGAATCGACCCCGTCAAGATCAACTCCACCTCCGCCGACCCGGCGGTTATCGCTAACGAGAGACAGTCCTTGCTACTTTCGTCTAATCCTCCC ACTGTGGACGACACAACTCATCATCATAATGGTTACTACCAACACCAGGGGATTCAGGTGGACGTTGGGAGAGGTCACAACAAGATTTCGTACCCAGGAG GGTCGTCCGGCGAAGGAGGCCTGCTTCGTGGTGGCGGCAGTGGAACCGGAAGCAGCGGAGGCGGAAATAATAGCCATGGGCAGGGGACGGGGACGGCGAT GGTGGTCCCGGATGTGTCCCACTTGGGGTGGGGACATTGGTACACCCTGCGTGAGCTGGAAGAAGCTACCAATTGTTTTGCCGACAGCAATGTCGTCGGG GAAGGAGGCTACGGCATCGTTTACCACGGCGTTTTGCAGGATGGCGGCCAGGTGGCTGTAAAAAATTTGCTTAATAACAGGGGACAGGCGGAAAGGGAAT TCAAGGTTGAAGTGGAAGCAATTGGAAGGGTCCGACATAAGAATTTAGTGAGGCTGCTTGGCTATTGTGCAGAAGGAGCTCGAAGGATGTTGGTTTATGA GTATGTGAACAATGGCAACTTGGAGCAGTGGCTTCATGGAGAGGTAGGGCCTTGCAGCCCTCTTAGTTGGGATATGAGAATGAACATTATTTTAGGAGCT GCTAAAGGGTTAGCTTACCTTCACGAAGGGCTTGAACCGAAAGTCGTCCACAGGGATGTGAAATCAAGCAACATTTTGCTTGATCAGCTGTGGAATGCCA AGGTCTCAGATTTTGGTCTGGCCAAGCTCCTTTGCTCCGAGAGGAGTTACATTACAACCAGGGTTATGGGAACATTCGGGTATGTAGCTCCGGAATATGC AAGTACAGGGATGTTGAATGAGAGCAGTGATGTTTACAGCTTTGGGATTCTAGTCATGGAGATTATAAGTGGGAGGAACCCAGTTGATTACGCCAGGCCT CCTGAAGAGGTGAACTTAGTTGATTGGATAAAGAAGATGGTTACGAGCAGAAATGCAGAAGGGGTGTTGGATCCTAGATTATCAGAAAAACCAGCTTCAA GGGCATTGAAGAGGGCTCTTCTGGTAGCTCTCCGTTGTGTTGATCCAAACTCACAGAAACGACCCAAAATGGGACACATTGTACATATGCTAGAGGCTGA TGATTCCTTCAGAGAAGATCGGAGAGCTCCTGCAAGTGTACGGAATTGCAGAGTGAAAGATGGAGTGACAGAATCAGATGCTGGAGTTATCAAAAGTGGT CCTGAAGGTGAGGTGGGAGCTATAGAGGCAAGATAG
AA sequence Show only first row Show all	>Lus10041593 pacid=23146966 polypeptide=Lus10041593 locus=Lus10041593.g ID=Lus10041593.BGIv1.0 annot-version=v1.0 MVMTDQLSRPTSIFGLKLWVIVGVSAGASFVILLFLITLWLASKRSSNRSASDVNRHPIPTVSKEIQEIRIDPVKINSTSADPAVIANERQSLLLSSNPP TVDDTTHHHNGYYQHQGIQVDVGRGHNKISYPGGSSGEGGLLRGGGSGTGSSGGGNNSHGQGTGTAMVVPDVSHLGWGHWYTLRELEEATNCFADSNVVG EGGYGIVYHGVLQDGGQVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGARRMLVYEYVNNGNLEQWLHGEVGPCSPLSWDMRMNIILGA AKGLAYLHEGLEPKVVHRDVKSSNILLDQLWNAKVSDFGLAKLLCSERSYITTRVMGTFGYVAPEYASTGMLNESSDVYSFGILVMEIISGRNPVDYARP PEEVNLVDWIKKMVTSRNAEGVLDPRLSEKPASRALKRALLVALRCVDPNSQKRPKMGHIVHMLEADDSFREDRRAPASVRNCRVKDGVTESDAGVIKSG PEGEVGAIEAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01330			Protein kinase superfamily pro...		Lus10041593 [exp]	0	1
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	6.3	0.9425
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032260 [exp]	6.7	0.8803
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	6.8	0.9368
AT3G15115			unknown protein		Lus10013678 [exp]	7.0	0.8783
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	9.9	0.9357
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018031 [exp]	10.6	0.9326
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	11.5	0.9092
AT4G02630			Protein kinase superfamily pro...		Lus10012664 [exp]	12.6	0.8752
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10009453 [exp]	13.0	0.9325
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	16.4	0.9284

Compare expression of checked genes

Lus10041593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.