Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50220 367 / 5e-127 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 363 / 8e-126 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT2G15440 214 / 5e-67 Protein of unknown function (DUF579) (.1) AT1G71690 146 / 2e-41 Protein of unknown function (DUF579) (.1) AT1G33800 142 / 1e-39 Protein of unknown function (DUF579) (.1) AT1G09610 140 / 3e-39 Protein of unknown function (DUF579) (.1) AT4G09990 129 / 8e-35 Protein of unknown function (DUF579) (.1) AT1G27930 127 / 3e-34 Protein of unknown function (DUF579) (.1) AT1G67330 123 / 1e-32 Protein of unknown function (DUF579) (.1) AT4G24910 104 / 1e-25 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006258 [exp] 504 / 0 AT5G67210 458 / 4e-163 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10009378 [exp] 305 / 3e-102 AT5G67210 336 / 5e-115 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10019326 [exp] 276 / 1e-90 AT5G67210 335 / 2e-114 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 232 / 2e-74 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 231 / 3e-74 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 143 / 3e-40 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 143 / 4e-40 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 132 / 6e-36 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 131 / 1e-35 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G141300 [exp] 383 / 2e-133 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 376 / 1e-130 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 266 / 2e-87 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 260 / 3e-85 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 143 / 2e-40 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 142 / 6e-40 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 142 / 8e-40 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 140 / 3e-39 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 139 / 2e-38 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 137 / 3e-38 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10041596 pacid=23146793 polypeptide=Lus10041596 locus=Lus10041596.g ID=Lus10041596.BGIv1.0 annot-version=v1.0 ATGAAGAACAACATCAACAACAACAACAACAACAATGGGAATGGCAACACAAAGCTCATCCTCCTCCATCCTTACAATCTTCAAAAGCAAGGCGCCACCA CTTCTTATTCCAACCGCCTTTGGGTTCTCGCCTTTCTCTCCTTCTTCACACTCGCCTTCCTCCTCACCCTTATCTACACCCGCGACTCTTTCACTACCAA GTCTTCCTCCCTCCACGCCGCCGCCGTTTCCTCTACTGTACTACTCTCTTCATCTTCATCATCAGCCGCCGCAGCAGCAATTACTCCTACTCCACCTGCC CCTCTCCCGACCACAGTCATCAACACCCTCCTCCACTACGCCGCCCGTTCAAACGACACCTTCCATATGACCCACTCTGAGATGAAGCCCATCTCCGACG TCCTCCGGAAATGCTCTTCCTCCCCTTGCAACCTCCTCGTCTTCGGCCTCACCCACGAGACCCTCCTCTGGAAGTCCCTCAACCTCAACGGGCGCACCCT CTTCGTCGAGGAAAACCGCTACTACGCAGCCTACTTCGAGGAGATCCACCCGGACATCGACGTTTTCGATATCCAGTACACCACCAAGGTCTCCGACATG AAGGAGCTCCTCGCCTCCGCGAAGGAGCTCGCTGGACAGGAGTGCCGCCCTGTCCAGAACTTGCTCTTCTCCGAATGCAAGCTCGGGATCAACGACCTTC CTAACCACGTCTACGATGTCGATTGGGATGTCATCCTAATCGACGGCCCTCGCGGAGATGGAGGTGATGGGCCTGGAAGGATGATGCCTATATTCACGGC TGGAGTTCTGGCCAGGAGTAAGAAGGGCGGGGGTGGGAAGACGCACGTGTTTGTTCACGATTATTACAGGGAGGTGGAGAGGGTTTACGGGGACGAGTTT TTGTGTAGGGAGAATCTGGTGGAGTCAACTAATGGCATGTTGGCTCACTTCGTGGTTGAGAGGATGGACGAAAACTCCACCACCTTCTGCCGGAACCGTA GTGGCACGGCGCTGGCTGCTGCTGCTAAAATGGCTTAA
AA sequence Show only first row Show all	>Lus10041596 pacid=23146793 polypeptide=Lus10041596 locus=Lus10041596.g ID=Lus10041596.BGIv1.0 annot-version=v1.0 MKNNINNNNNNNGNGNTKLILLHPYNLQKQGATTSYSNRLWVLAFLSFFTLAFLLTLIYTRDSFTTKSSSLHAAAVSSTVLLSSSSSSAAAAAITPTPPA PLPTTVINTLLHYAARSNDTFHMTHSEMKPISDVLRKCSSSPCNLLVFGLTHETLLWKSLNLNGRTLFVEENRYYAAYFEEIHPDIDVFDIQYTTKVSDM KELLASAKELAGQECRPVQNLLFSECKLGINDLPNHVYDVDWDVILIDGPRGDGGDGPGRMMPIFTAGVLARSKKGGGGKTHVFVHDYYREVERVYGDEF LCRENLVESTNGMLAHFVVERMDENSTTFCRNRSGTALAAAAKMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	1.0	0.9902
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	1.4	0.9877
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	3.5	0.9871
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	4.9	0.9842
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	4.9	0.9854
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	6.3	0.9843
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	6.5	0.9833
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	6.9	0.9829
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	7.3	0.9827
					Lus10004651 [exp]	8.2	0.9785

Compare expression of checked genes

Lus10041596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.