Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67220 593 / 0 FMN-linked oxidoreductases superfamily protein (.1) AT3G49640 110 / 5e-27 Aldolase-type TIM barrel family protein (.1.2) AT4G38890 66 / 3e-11 FMN-linked oxidoreductases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006260 [exp] 822 / 0 AT5G67220 592 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10003486 [exp] 106 / 2e-25 AT3G49640 498 / 2e-178 Aldolase-type TIM barrel family protein (.1.2) Lus10035460 [exp] 66 / 3e-11 AT4G38890 870 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047300 [exp] 612 / 0 AT5G67220 605 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Potri.009G125500 [exp] 66 / 1e-11 AT4G38890 886 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10041598 pacid=23147031 polypeptide=Lus10041598 locus=Lus10041598.g ID=Lus10041598.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCCTCACCCAACTTGTCGATCCGCCTCCTCCAACTGCAGATGATATTCTCTGCTCCGTTGAACACCAGCGAGAGAAAGACTTCTCTACTT CTTCAGCAGCAGAGCCTTCTTGCGTCTCACCTTCGCCCAATGGATACCTGAGTGGTGAGTCTCATGCGGAGCGAGCGTGGGCGTATTGGATCAAGCTTGG ACGGCCCAAGTCTATCGTCGCTCCGATGGTTGACAACTCCGAGCTGCCATTTCGGTTGCTCTGCAAAAAGTATGGAGCCGAAGCTGCTTACACGCCCATG CTACATTCGAGGATTTTCACCGAGAATGAAAAGTACCGGACCCAAGAGTTCACTACATGTAAGGAGGATCGGCCGCTATTTGTTCAATTTTGTGCGAATG ATCCAGAAACCCTACTTGAAGCTGCAGGGAGAGTGCAGCCTTATTGCGATTATGTTGATATCAATTTCGGTTGTCCTCAGCGGATAGCCAGACGGGGTTA CTATGGAGCATTTCTAATGGATAACTTGCCACTTGTAAAGTCTCTGGTTGAGAAGCTATCTCAAAACCACATCCGTGTATCCTGTAAAATTCGGATATTC CCAAAATTGGAAGACACGATTAGTTATGCCAGAATGTTGGAGGAAGCTGGCTGCTGGGTGTTGGCTGTCCATGGGCGGACAAGAGATGAAAAAGACGGGA AGAAGTTTAGGGCAGACTGGAAAGCAATCAAGGCAGTAAGAGAAGCAGTGAGAATCCCAGTCCTTGCTAATGGCAACATCCGTCACATCGAAGACGTCCA TGATTGTTTGAAAGAAACAGGCGTGGAAGGAGTGCTTTCAGCAGAAACTCTGCTCGAGAATCCAGCAGTCTTTGCTGGATACCGTACACCTGAATGGGTC GAAGGTGACAAGGAAAGCCATCGAGATGGATTACTTGACCAGGCAGATTTGGTGGTGGAGTATTTGAAGCTTTGTGAGGAGTACCCTGTGCCGTGGAGAA TGATTCGATCCCATGTCCATAAGATGTTAGGGGAGTGGTTCAGGATTCATCCTCACGTACGAGAGGACCTCAATGCTCAATCCAGACTCACCTTTGAATT TATGTATGATATGGTGGACCGTCTAAAGAAGCTGGGTGGGAGGATTCCCCTTTACGTTAAAGACGTAGATGCAGCTAGGCCTATAGCTTGTGCTGGTGGG TTAGCGAGCTGA
AA sequence Show only first row Show all	>Lus10041598 pacid=23147031 polypeptide=Lus10041598 locus=Lus10041598.g ID=Lus10041598.BGIv1.0 annot-version=v1.0 MASSLTQLVDPPPPTADDILCSVEHQREKDFSTSSAAEPSCVSPSPNGYLSGESHAERAWAYWIKLGRPKSIVAPMVDNSELPFRLLCKKYGAEAAYTPM LHSRIFTENEKYRTQEFTTCKEDRPLFVQFCANDPETLLEAAGRVQPYCDYVDINFGCPQRIARRGYYGAFLMDNLPLVKSLVEKLSQNHIRVSCKIRIF PKLEDTISYARMLEEAGCWVLAVHGRTRDEKDGKKFRADWKAIKAVREAVRIPVLANGNIRHIEDVHDCLKETGVEGVLSAETLLENPAVFAGYRTPEWV EGDKESHRDGLLDQADLVVEYLKLCEEYPVPWRMIRSHVHKMLGEWFRIHPHVREDLNAQSRLTFEFMYDMVDRLKKLGGRIPLYVKDVDAARPIACAGG LAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	0	1
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	2.2	0.7821
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	2.6	0.7062
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	4.2	0.7445
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	6.9	0.7578
AT4G25330			unknown protein		Lus10012314 [exp]	7.9	0.7037
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	8.7	0.7164
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	8.8	0.6866
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	12.8	0.7409
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030718 [exp]	13.4	0.6864
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	14.5	0.7088

Compare expression of checked genes

Lus10041598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.