Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23320 216 / 5e-68 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G31550 207 / 1e-64 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT4G24240 201 / 7e-62 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G30590 149 / 2e-41 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT3G04670 142 / 2e-39 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT2G24570 140 / 6e-39 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT5G28650 140 / 7e-39 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT1G29280 110 / 5e-28 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT2G34830 105 / 3e-25 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT3G58710 103 / 3e-25 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006261 [exp] 552 / 0 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2) Lus10010053 [exp] 245 / 6e-79 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10021999 [exp] 147 / 1e-41 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10042538 [exp] 147 / 2e-41 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10024864 [exp] 147 / 3e-41 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10018776 [exp] 147 / 4e-41 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10033857 [exp] 145 / 4e-40 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10014745 [exp] 144 / 6e-40 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10020136 [exp] 143 / 6e-40 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047400 [exp] 352 / 4e-121 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G141400 [exp] 328 / 2e-111 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 245 / 7e-79 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 236 / 3e-75 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.018G008500 [exp] 154 / 5e-44 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2) Potri.005G219500 [exp] 149 / 8e-42 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.002G043500 [exp] 149 / 8e-42 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.018G139300 [exp] 146 / 3e-41 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.003G111900 [exp] 144 / 3e-40 AT2G30590 154 / 5e-44 WRKY DNA-binding protein 21 (.1) Potri.006G072400 [exp] 143 / 4e-40 AT4G31550 297 / 3e-100 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10041600 pacid=23147042 polypeptide=Lus10041600 locus=Lus10041600.g ID=Lus10041600.BGIv1.0 annot-version=v1.0 ATGGCCGTAGAGCTGATGATGAACTACGGCGGCAACACAAACTTCGTCAGCCAAATCGAAGAGACAGCAGTTCAAGAAGCTGCCTCCGGCCTTGAAAGCG TCAACAAGCTAATCAGGCTCCTCTCCCAACACCAGACGACCCAAGATCAGCACAAGATATGCAACTCCGGTCCCTCCGCCTCCGCCGCCGTCAATATTGA AACGGACTGCAGAGCCGTGGCGGACGCTGCGGTATCCAAGTTCAGAAAGGTAATTTCCCTCCTCGGCCGCACCAGAACCGGCCACGCCCGCTTCCGCAGA GCCCCCGTCGCCTCCTCCGCCGGGGCTGCAAATCTGAGCCAGCAGAGTCAGAACAAAGTGGGTCCACATCAGATTCCAGAGAGCAAGGTATACTATGCTA CGCCGATTCAGCAGATTCCACCGTCGACGCAGGATTTCGGACTTGCAGTGGTACCCATAGAGAGGAAAGATTTGTCGACCGCCACAATAAACTTCTCGTC TTATTCGTCAGCCGGAAACACGTCGTTTGTGTCGACGTTGACCGGAGAAACGGAGAGCAAGCAGCAGCCGTCTTCGTCATCGGCGGCGTTCCAGATTGCG AATATGTCTCAGGCGGCGACGTCGGCGAGTGGGAAGAGGCCACCGCTGTCGTCGTCTTCGTCGATGAAGAGGAAGTGTAGCTCGGAGACTATTGGATCCG GAAAATGCGCCAGTGGTGGCTCGTCGGGTCGCTGCCATTGCTCGAAGAAGAGCAGAAAGATGAGGATGAAGAGGGTAGTCAGGGTTCCAGCAATAAGCAT GAAGATGGCAGACATTCCCCCAGACGATTACTCATGGCGCAAGTATGGTCAGAAGCCAATTAAAGGGTCCCCTTATCCACGGGGCTATTACAAGTGCAGC AGCGTAAGGGGATGCCCAGCCAGGAAGCATGTGGAAAGAGCAGTGGATGATCCTGCGATGCTGGTGGTAACCTACGAAGGAGATCACAATCATAACACGT TGTGTGTTGTTGAGACAACTAATCTCATCTTAGAATCCTCCTAA
AA sequence Show only first row Show all	>Lus10041600 pacid=23147042 polypeptide=Lus10041600 locus=Lus10041600.g ID=Lus10041600.BGIv1.0 annot-version=v1.0 MAVELMMNYGGNTNFVSQIEETAVQEAASGLESVNKLIRLLSQHQTTQDQHKICNSGPSASAAVNIETDCRAVADAAVSKFRKVISLLGRTRTGHARFRR APVASSAGAANLSQQSQNKVGPHQIPESKVYYATPIQQIPPSTQDFGLAVVPIERKDLSTATINFSSYSSAGNTSFVSTLTGETESKQQPSSSSAAFQIA NMSQAATSASGKRPPLSSSSSMKRKCSSETIGSGKCASGGSSGRCHCSKKSRKMRMKRVVRVPAISMKMADIPPDDYSWRKYGQKPIKGSPYPRGYYKCS SVRGCPARKHVERAVDDPAMLVVTYEGDHNHNTLCVVETTNLILESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	0	1
					Lus10039779 [exp]	2.4	0.8281
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	2.4	0.8641
AT2G46150			Late embryogenesis abundant (L...		Lus10032309 [exp]	4.1	0.7815
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	5.7	0.7862
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	6.0	0.7948
AT5G16110			unknown protein		Lus10009170 [exp]	6.5	0.8246
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10021855 [exp]	7.4	0.8117
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	9.8	0.8004
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	10.5	0.7981
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	13.1	0.8003

Compare expression of checked genes

Lus10041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.