Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52150 242 / 4e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 132 / 2e-36 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G60000 110 / 6e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 102 / 8e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 101 / 3e-25 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 89 / 2e-20 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G01080 85 / 4e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22760 84 / 4e-18 PAB3 poly(A) binding protein 3 (.1) AT2G35410 82 / 7e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71770 78 / 3e-16 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010262 [exp] 359 / 3e-124 AT3G52150 262 / 5e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029372 [exp] 135 / 1e-37 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 131 / 3e-36 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023723 [exp] 114 / 2e-29 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002222 [exp] 113 / 2e-29 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 112 / 4e-29 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 105 / 1e-26 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 101 / 3e-24 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10041952 [exp] 84 / 2e-18 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065900 [exp] 285 / 5e-97 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G202000 [exp] 125 / 7e-34 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.006G127200 [exp] 123 / 1e-33 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 122 / 4e-33 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 119 / 3e-32 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G068300 [exp] 120 / 4e-32 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 117 / 2e-31 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G141300 [exp] 98 / 8e-24 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 98 / 1e-23 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G090200 [exp] 97 / 2e-23 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10041602 pacid=23146910 polypeptide=Lus10041602 locus=Lus10041602.g ID=Lus10041602.BGIv1.0 annot-version=v1.0 ATGGCAGGCATCTCAACATCTCTGCTCTCGCCTTTACCCACCACAACTTCAAAACTCCACTTTTCCAAGAAACCCACTTCCCAATTCCTAATTCAAACCA ACCAAACTCACACTCACTGTGTCTTCCCACAATTGCGACGGCTTATCAACTCCTCAAGGCTCCGTGCGGTAGCTGAAGTAGCCGCCCCACCAGCTGACCC ATCCTCACCAGCTGCCAGAAGGCTCTACGTTGGCAACATTCCTAGGAACTTGAAGAATGACGAGCTCCGCAAAATTGTTGAAGAGCATGGAGCTGTCGAC AAAACTGAGATTATGTTTGATAAATACTCAGGTAGGAGCCGTCGCTTTGCATTTGTGACAATGAAGACTATCGAGGATGCTAATGCTGCAATTGAGAAAC TGAATGGCACTGAAATTGGTGGACGTGAGATCAAAGTTAACATTACAGAGAAACCCTTGGCACAACTTGATTCACCACTCTTGCAATCTGATGAAACCCC TTTCATTGACAGCCCATACAAGGTTTATGTTGGGAATCTTGCCAAAACGGTTACCACGGATATTCTCAAGGCCTTCTTTTCTGACAAGGCAAATGTTATG AGTGCAAAGGTTTCTCGAGTCCCAGGAACTTCGAAATCAAGTGGGTTTGGATTCGTCACATTCTCGTCAGATGAGGATGTACAAGTTGCCATCACCTCTT TCAACAATTCTCTAAGATGGCCATCGACAGCTACCGATGGATGGCAGTTGTTTCAGGCAGCATGGGCTCTAATCTTCTCAAGGGTGAAAAAGGGTCCATA A
AA sequence Show only first row Show all	>Lus10041602 pacid=23146910 polypeptide=Lus10041602 locus=Lus10041602.g ID=Lus10041602.BGIv1.0 annot-version=v1.0 MAGISTSLLSPLPTTTSKLHFSKKPTSQFLIQTNQTHTHCVFPQLRRLINSSRLRAVAEVAAPPADPSSPAARRLYVGNIPRNLKNDELRKIVEEHGAVD KTEIMFDKYSGRSRRFAFVTMKTIEDANAAIEKLNGTEIGGREIKVNITEKPLAQLDSPLLQSDETPFIDSPYKVYVGNLAKTVTTDILKAFFSDKANVM SAKVSRVPGTSKSSGFGFVTFSSDEDVQVAITSFNNSLRWPSTATDGWQLFQAAWALIFSRVKKGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	0	1
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	2.2	0.9539
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	4.7	0.9532
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	4.9	0.9233
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	5.2	0.9421
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	7.2	0.9414
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	9.2	0.9182
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	9.5	0.9311
AT4G30845			unknown protein		Lus10026098 [exp]	9.8	0.9189
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	10.0	0.9241
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	11.2	0.9323

Compare expression of checked genes

Lus10041602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.