Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06120 1604 / 0 ARM repeat superfamily protein (.1.2.3.4) AT3G54360 484 / 6e-159 zinc ion binding (.1) AT1G06770 44 / 0.0006 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G04490 44 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024115 [exp] 1922 / 0 AT5G06120 1616 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Lus10024116 [exp] 699 / 0 AT3G54360 491 / 8e-175 zinc ion binding (.1) Lus10033860 [exp] 49 / 3e-05 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 48 / 5e-05 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10042566 [exp] 48 / 7e-05 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 48 / 0.0001 AT3G04490 1370 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036100 [exp] 1689 / 0 AT5G06120 1817 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Potri.003G189500 [exp] 1657 / 0 AT5G06120 1792 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Potri.003G189400 [exp] 586 / 0 AT3G54360 481 / 1e-170 zinc ion binding (.1) Potri.001G036400 [exp] 572 / 0 AT3G54360 498 / 4e-177 zinc ion binding (.1) Potri.002G044100 [exp] 46 / 0.0001 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041603 pacid=23147055 polypeptide=Lus10041603 locus=Lus10041603.g ID=Lus10041603.BGIv1.0 annot-version=v1.0 ATGGAGAGTTTGGCCCAACTGGAAGACCTGTGTGATAAGCTGTACAATTCAAGGGATTCTGCTGAGCGTGCTCATGCTGAGAACACTCTGAAAATCTTCT CAGTTAACATTGATTACATTTCTCAGTGCCAATACATTCTGGATAATGCTTTATCGTCTTATGCGTTGATGCTCGCCAGTACAAGTTTGATGAATCAAAT TACCGAGCACAGGCTGTCTTTGCAACTCCGTCTTGACATCAGGAATTATCTAGTTAACTATTTGGCCACCCGAGGACCAAATTTGGAGCATTATGTTATT GCCTCATTGATTAGACTCCTATGTCGACTCACCAAATTTGGATGGTTTGATGACGATAGATTCAAAGAATTGGTTCAGGAGTCCACAAGCTTCTTGACTC AGGCAACTTCAGATCACTATGCAATCGGTTTGAAGATACTGAATCAGCTAGTTACTGAGATGAATGTGCATACTCCCGGGTTGCCATCAACGCATCATCG AAGAGTGGCTTGCTCATTTAGAGATCAATCACTGTTCCAAATATTCCAAATTTCTATAACATCTTTGCATCAACTGAAGAATGATGGTACTGCAAGTGAG TTACAAGAGTTGGCAATTTCACTTTCTCTTCAATGCTTGTCTTTTGATTTTGTTGGGACGTCCATTGATGAAAGCTCAGACGAGTTTGGTACTGTCCAGA TTCCTTCGTCTTGGAAACCAGTTTTAGAAGATCCATCAACATTGCAGATTTTCTTTGATTACTATGCGATTATGATCAGTAAGCCAAAGCTCTCGAAGCA AGCATTGGATTGTTTGGTTCGACTTGCTTCAGTGAGGCGCTCTTTATTTACAAATGATGCTGCCCGTTCTAGGTTCTTAGCACATTTAATGACGGGAACC AAGGAAATCCTACAGATGGGGACAGGTCTTTCTGATCATGACAATTACCATGAGTATTGTCGGCTTCTTGGGCGGTTCAAAGTGAATTATCAGTTGTCAG AGCTGGTGAATGTGGAAGGTTATGGTGAATGGATACAGTTGGTGGCAGAGTTCACGTTGAAGTCTTTACAGTCGTGGCAGTGGGCCAGTAGCAGTGTGTA CTACCTCATAGGGTTGTGGTCAAGATTGGTGGTGTCTGTGCCTTATCTGAAAGGTGACGCTCCAAGTTTGCTTGATGAATTTGTGCCTAAAATTACTGAA GGCTTTATTACATCAAGATTTAATTCGCTGCAGGCTGGGCCGCATGACGATTCTTCAGAGAACTTGCTGGACACTGTCGAATTTCTTCAAGATCAGCTGG AGTGTTTTCCTCACCTTTGCAGATTTCAGTACGAAAGCAGTGGCTTGTATATAATAAACACGATGGAGCCTCTTCTCCAACAATATACAGAAAGAGCACG ATTGCAGGGCACTAATAACAAAGAACTTGAAGTTATTGAGGCAAAGCTTTCTTGGATTGTCCATATTATTGCTGCTATTTTGAAGATAAAACAAGCTGCA CGTTCTAGCACGGAGTCTCAAGAAGTTCTTGATGCAGAGCTTTCAGCACGTGTTTTGCAATTGATAAGTGTCACTGATAGTGGACTGCATTGTCAGCGAT ATGGAGAATTGAGCAAGCAAAGGCTTGATCGAGCGATTCTTACGTTCTTCCAACATTTCCGTATGTCTTATGTGGGCGATCAGGCTGTGCATTCATCCAA GCAGTTATATGCTCGTCTATCTGAGCTTCTTGGACTTCATGATCATCTTTTGCTGTTGAATGTTATTGTTGGAAAAATTGCTACAAATTTGAAGTGCTAT ACCGAGAGTGAAGAGGTCATTAATCATACATTAAGTTTGTTCCTTGAGTTAGCATCTGGATACATGACTGGGAAGCTGCTTCTGAAGTTGGATGCTGTGA AGTTCATCATAGCGAACCATACTAGGGACAACTTTCCTTTCCTTGAAGAACAGAGATTTGCTCGTAGCAGGACAAGTTTTCATTACACAATTGGCTGGCT GATATTCATGGAAGACAACCCTGTGAAATTTAAGGCTTCTATGGAACCACTTCTCAAGGTTTTTCTCAATTTGGAGTCAATTCCAGAACCAGCGTTTCGC ACTGATGCTGTGAAATATGCTTTGATTGGCCTGATGAGAGATCTTAGAGGAATTGCAATGGCGACTAGCAGTCGTCGAACATATGGATTCTTATTTGATT GGCTATATCCTGCTCACTTGCCCCTTCTCTTGAAAGGCATCTTGCATTGGGCAGATACGCCAGAGGTCACTACGCCCATTCTAAAATTCATGGCCGAGTT TGTCTTAAACAAGGCCCAAAGATTAACATTCGACTCATCTTCTCCTAATGGCATTCTTCTTTTCCGAGAAGTCAGCAAGTTGATTGTTGCGTATGGTACG AGAATATTGGCGCTTCCCAATCCTGCTGCTAGTTCTATGTATGACTACAAGTACAAGGGAATATGGATTTGTTTAACCATTCTCTCAAGAGCTCTTTCTG GAAATTATGTCAACTTTGGTGTCTTTGAACTGTATGGTGATAGAGCCCTCTCTGATGCTTTAGATATAGCTCTAAAGATGGCTCTTTCAATTCCTATGTC AGATATTTTTGCATTTAGAAAGCTACAAAAGGCTTACTTTGGACTATTGGAGGGTCTGTTCAGCAGCCATTTATCTTTCATACTCAATCTTGATGCGAAC ACCTTCATGCATCTTGTTGGTTCTCTTGAATCTGGTCTTAAAGGTCTTGATAGTCACATCTCTGCACAGTGTGCATCTGCTGTTGATAATTTGGCTGCTT TCTATTTCAACAACATCACAATGGGGGAGGCGCCCATACTACCTGCTGCAAACAATCTTGCTCGACACATTGCAGACTGCCCAACTTTGTTTCCAGAAAT ATTGAAGACCTTGTTTGAAATTGTTTTATTTGAGGACTGTGGCAACCAGTGGAGTCTTAGCCGACCTATGTTGAGCTTGATACTAATCAATGAGCAGATA TTCTCTGATTTGAAGGCTCGGATTTTGGCAACACAGTTCACTCTAGTTAAGCTGAATGAAATTATAAAAAATGGAGGAATAATGACAAAAAAGGAAAGAA ATTTAGTGTTCAATATGACCCCTGTATGCCCATTTGTGAAAGCTGCACGTCCTGATGATGCATCGTCTAAGAAACAAGGGGAAACTCCGAACAAACATGG GTCTGAGCTTGAAGTGAAGGCAAAGAAAGATGTGGGTGATTCTGCCAGCGTCTCTCCTAAATGTCCCTTTGGATACGATTCCCAGACCTTTAAATTGGGC CCTCTTAGTTGCATGATATGCCAAGCACTTCTGTTTGACTGTGCCAAGTGCATTCCTTGTTCTCACGTCTTTTGCAAAGTATGCGTCTCCCGCTTTAAGG ACTGTCCTTTATGTGGAGCTGATATTGAGAAGATTGAAGCTGACACCAACCTTCAAAGTGTAGTTGATCGCTTTATTGATGGTCATGCTAGAATCAAGAG GTCTAACCTTGATTCAGATAAAGATGCAAGTGCAGATACAAAGGTGACTTATGCGGATGTATCTTTGGAGAGAGGTGCTTTCCTGGTCCAGCAGGCTATG AGGGCATTTCGTGCTCAGAATGTGGAAAGTGCTAAATCAAGACTCTGTGTATGTGTTGATGACATCCGGGGGCAGATTGAAACAATGGGCAACACAGACG AATTGTGCTCCCAGCTTGGAGCAGTTCTAGGAACACTCGGTGACTGTTGTCGGGCAACAGGGGATGCTACTTCTGCAATTGGTTATTTTGAAGAGAGTGT TGAATTCCTTTCAAAACTGCCCACGGAGAATCTGGAGATCACACACACTCTTTCTGTCTCTCTGAACAAAATTGGAGATCTGAAGTATTATGCTGGAGAC ATGGAAGCTGCAAGATCATACTATCTACGCTCACTTAATGTGCGTCGTGACGCCATGAAACATCATCCAAACGTTCCGTCCCAGACCGTAGATGTAGCTG TTTCCCTTGCAAAGGTTGCGGATGTCGATAGAAGCATAGGCAATGAAGATGCTGCAGGTGACAGGTTTCAAGAAGCCATTAAATTGTTGGAGTCCTTGAC ATTAAAACCCGAAGAAGTTGGTCTTGAGCAAAGGGTAAGATTTTCGCAGCTTCAATTATTTGGAAACACTGCGTTTCTGGAATCCTGA
AA sequence Show only first row Show all	>Lus10041603 pacid=23147055 polypeptide=Lus10041603 locus=Lus10041603.g ID=Lus10041603.BGIv1.0 annot-version=v1.0 MESLAQLEDLCDKLYNSRDSAERAHAENTLKIFSVNIDYISQCQYILDNALSSYALMLASTSLMNQITEHRLSLQLRLDIRNYLVNYLATRGPNLEHYVI ASLIRLLCRLTKFGWFDDDRFKELVQESTSFLTQATSDHYAIGLKILNQLVTEMNVHTPGLPSTHHRRVACSFRDQSLFQIFQISITSLHQLKNDGTASE LQELAISLSLQCLSFDFVGTSIDESSDEFGTVQIPSSWKPVLEDPSTLQIFFDYYAIMISKPKLSKQALDCLVRLASVRRSLFTNDAARSRFLAHLMTGT KEILQMGTGLSDHDNYHEYCRLLGRFKVNYQLSELVNVEGYGEWIQLVAEFTLKSLQSWQWASSSVYYLIGLWSRLVVSVPYLKGDAPSLLDEFVPKITE GFITSRFNSLQAGPHDDSSENLLDTVEFLQDQLECFPHLCRFQYESSGLYIINTMEPLLQQYTERARLQGTNNKELEVIEAKLSWIVHIIAAILKIKQAA RSSTESQEVLDAELSARVLQLISVTDSGLHCQRYGELSKQRLDRAILTFFQHFRMSYVGDQAVHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCY TESEEVINHTLSLFLELASGYMTGKLLLKLDAVKFIIANHTRDNFPFLEEQRFARSRTSFHYTIGWLIFMEDNPVKFKASMEPLLKVFLNLESIPEPAFR TDAVKYALIGLMRDLRGIAMATSSRRTYGFLFDWLYPAHLPLLLKGILHWADTPEVTTPILKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGT RILALPNPAASSMYDYKYKGIWICLTILSRALSGNYVNFGVFELYGDRALSDALDIALKMALSIPMSDIFAFRKLQKAYFGLLEGLFSSHLSFILNLDAN TFMHLVGSLESGLKGLDSHISAQCASAVDNLAAFYFNNITMGEAPILPAANNLARHIADCPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLILINEQI FSDLKARILATQFTLVKLNEIIKNGGIMTKKERNLVFNMTPVCPFVKAARPDDASSKKQGETPNKHGSELEVKAKKDVGDSASVSPKCPFGYDSQTFKLG PLSCMICQALLFDCAKCIPCSHVFCKVCVSRFKDCPLCGADIEKIEADTNLQSVVDRFIDGHARIKRSNLDSDKDASADTKVTYADVSLERGAFLVQQAM RAFRAQNVESAKSRLCVCVDDIRGQIETMGNTDELCSQLGAVLGTLGDCCRATGDATSAIGYFEESVEFLSKLPTENLEITHTLSVSLNKIGDLKYYAGD MEAARSYYLRSLNVRRDAMKHHPNVPSQTVDVAVSLAKVADVDRSIGNEDAAGDRFQEAIKLLESLTLKPEEVGLEQRVRFSQLQLFGNTAFLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	1.0	0.9461
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	2.4	0.9254
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	3.7	0.9088
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	3.9	0.9201
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	4.5	0.9137
AT3G63340			Protein phosphatase 2C family ...		Lus10000491 [exp]	4.7	0.8850
AT5G58100			unknown protein		Lus10027581 [exp]	5.7	0.9039
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	6.0	0.9050
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	6.3	0.9057
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	7.1	0.9135

Compare expression of checked genes

Lus10041603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.