Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024500 [exp] 97 / 3e-24 AT5G27440 44 / 2e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041604 pacid=23146682 polypeptide=Lus10041604 locus=Lus10041604.g ID=Lus10041604.BGIv1.0 annot-version=v1.0 ATGCAGAGCGCTCTGAAGCTCGGCTCTCTTCCCTCAGAAAGGCATGGGTTCTTCAACTTATCAGCAGGGCTGGCAATGGTTCGCCCTTCATCGCTACGCT CGTGCCGAATACAGATTCGCTGTCCGGTCATTTCCGCAAGAAAGGGCAACAAGGGATCCGGGTATCAAAGACTAGCTAAAATTTTACCCAAATTGGCCTT CACCGTTGCTTCGAATCTCAAGGTGCTACCCGAACCTATGGGTCTGATTCTAGCAGAACTCAGCAGTACCGGAGATGGCGGTGAAGGGGGTGCGGGGTCT TGGAAAGGTTTCAGCGGTGGCGGAGGCAGCGGGTGGGGAAAAAAGAGAGGGAAGAGAAGAAATCCGATGGTCTTGTTGGGTCTGATTGTGGTTTGTGGAG TCGCAGTATATATGGTTTTGTACGGTAAAGGTGGGACGGAGAAAGATTTGATATTGGGGGTTTCGGTTTTTTCCATGGTTATTGCAATTTTGGTGGAAGT GCTCGGAAGAGGAGCTAAGGATTGGATTCTAGGGTTGTGCATTTTCGGCGCTGGGGTTGTTTTGGGAATGAGAAGAGACGATTTGCGGAAATGGGTGTTG ATGCAAGGGAATACTTGTTCATCAGTTTTGCTGCTTAGGAAGGGAAGAGGAAGAAAATCAAGAAGATCAGGTTTGAAACTTTGGTAG
AA sequence Show only first row Show all	>Lus10041604 pacid=23146682 polypeptide=Lus10041604 locus=Lus10041604.g ID=Lus10041604.BGIv1.0 annot-version=v1.0 MQSALKLGSLPSERHGFFNLSAGLAMVRPSSLRSCRIQIRCPVISARKGNKGSGYQRLAKILPKLAFTVASNLKVLPEPMGLILAELSSTGDGGEGGAGS WKGFSGGGGSGWGKKRGKRRNPMVLLGLIVVCGVAVYMVLYGKGGTEKDLILGVSVFSMVIAILVEVLGRGAKDWILGLCIFGAGVVLGMRRDDLRKWVL MQGNTCSSVLLLRKGRGRKSRRSGLKLW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27440			unknown protein		Lus10041604 [exp]	0	1
AT3G57930			unknown protein		Lus10031233 [exp]	4.5	0.7545
AT2G04280			unknown protein		Lus10036415 [exp]	5.2	0.8054
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	5.5	0.7735
AT2G38905			Low temperature and salt respo...		Lus10023489 [exp]	7.5	0.6898
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	9.8	0.7923
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	15.0	0.7381
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	15.2	0.7168
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	19.6	0.7471
AT2G04280			unknown protein		Lus10041091 [exp]	20.9	0.7845
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	21.5	0.7172

Compare expression of checked genes

Lus10041604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.