Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 140 / 4e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72910 130 / 3e-35 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72930 124 / 1e-34 TIR toll/interleukin-1 receptor-like (.1.2) AT1G72950 126 / 2e-33 Disease resistance protein (TIR-NBS class) (.1) AT1G72920 123 / 4e-33 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G17680 128 / 5e-33 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72940 122 / 5e-32 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72890 122 / 9e-32 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G72900 121 / 1e-31 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72860 123 / 4e-31 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026845 [exp] 406 / 1e-143 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10027920 [exp] 277 / 2e-92 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012063 [exp] 266 / 6e-89 AT5G36930 124 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041605 [exp] 182 / 4e-57 AT1G72940 93 / 3e-22 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) Lus10006929 [exp] 150 / 9e-44 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10029919 [exp] 146 / 9e-43 AT5G36930 105 / 5e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014671 [exp] 147 / 2e-42 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006928 [exp] 151 / 1e-41 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029921 [exp] 144 / 2e-40 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001314 [exp] 155 / 1e-45 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 162 / 1e-44 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 154 / 6e-43 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 153 / 1e-42 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G269950 [exp] 146 / 1e-42 AT5G36930 147 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 155 / 2e-42 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 155 / 3e-42 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G004500 [exp] 145 / 4e-42 AT5G36930 152 / 3e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 154 / 6e-42 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 151 / 7e-42 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10041606 pacid=23146944 polypeptide=Lus10041606 locus=Lus10041606.g ID=Lus10041606.BGIv1.0 annot-version=v1.0 ATGGCTTTCCGGGCAGATCAGTCGATCGCTGCCGAACTAGTACTACTGCTGCTGCTTTTGCTTTTCAATTTCATAACCTTGCCGGCCAACGCCAAAGCGC ATTCCTTTGGACCACCAAACACCCGTAGTTTCCGCGGTCACCATCACCCCCCAGCCGCCACCAAAATCCGCCCTCCTCCAAACACTCATTCCGCCGTTCC GCCGCCTCCTCCGGCGACGCCGTGGCGTTACCATGTGTTCCTCAATTTCCGGGGACTTGACGTCCGGTACACCATCGCCGACTATCTCTACTATGCGCTC GTACGGAAAGGAATCAAGGCCTTCCGCGACGACCATGACCTCCCTCGCGGAGAAAACATCACGGAAGCAATCCCACGGGCCATCGAGGAGTCCAGGATGT CGATTGTGGTTCTGTCAAAGGGATACGCCTCTTCGGAGTGGTGTTTGGACGAGCTTGTGAAGATCATGGAGGCCGCCAAGGACAAGCGTGTACACCACCA CCAGACTTTTCCCGTTTTCTACAAAGTATCTCCCGACGAAGTCTCCGATCAGTCATCGGGATGCTACAAGAATGACTTCGATCTGCACAAGAGAAAGTTC AGCTACGAGCGAGTGGACAATTGGCGCCACGCACTTACTTCAATTGCCGATGTTTCCGGCTGGGTTCTTGGCCCCAATGACCACAGATCTGAAGCAGAAA TGGTTGAAACTATAGCCAACGACATATTATTGAAGATCCAGCAGCAGGCTCCGTCAACGACGGAGGGAGAGTCGAATCAGAATGAACGGCCCGTGTTCGT TCCTGCTTTCCAGGCGCCGGAAAGAGCATTTAATGATGAAACGACTGCTACTGCAGGAGACGAGCCAGCTTCTTCTTCATTCCCTGTAAGTACAACAGTA GCGTGA
AA sequence Show only first row Show all	>Lus10041606 pacid=23146944 polypeptide=Lus10041606 locus=Lus10041606.g ID=Lus10041606.BGIv1.0 annot-version=v1.0 MAFRADQSIAAELVLLLLLLLFNFITLPANAKAHSFGPPNTRSFRGHHHPPAATKIRPPPNTHSAVPPPPPATPWRYHVFLNFRGLDVRYTIADYLYYAL VRKGIKAFRDDHDLPRGENITEAIPRAIEESRMSIVVLSKGYASSEWCLDELVKIMEAAKDKRVHHHQTFPVFYKVSPDEVSDQSSGCYKNDFDLHKRKF SYERVDNWRHALTSIADVSGWVLGPNDHRSEAEMVETIANDILLKIQQQAPSTTEGESNQNERPVFVPAFQAPERAFNDETTATAGDEPASSSFPVSTTV A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10041606 [exp]	0	1
					Lus10025402 [exp]	2.4	0.8732
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	3.5	0.8688
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	8.5	0.8550
AT3G57030			Calcium-dependent phosphotries...		Lus10034411 [exp]	10.3	0.8817
AT3G60810			unknown protein		Lus10004025 [exp]	15.1	0.8397
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	24.3	0.8382
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	28.2	0.8464
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10040227 [exp]	28.4	0.7875
AT2G20835			unknown protein		Lus10018561 [exp]	29.2	0.8385
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	32.4	0.8115

Compare expression of checked genes

Lus10041606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.