Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65580 1392 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 1251 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G43900 1245 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT2G31830 1120 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT4G18010 122 / 2e-28 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT3G63240 121 / 2e-28 DNAse I-like superfamily protein (.1) AT1G34120 118 / 3e-27 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 118 / 6e-27 DNAse I-like superfamily protein (.1.2) AT2G37440 100 / 1e-21 DNAse I-like superfamily protein (.1.2) AT2G01900 95 / 3e-20 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024113 [exp] 1176 / 0 AT1G65580 672 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10008330 [exp] 1163 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10027073 [exp] 1137 / 0 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024112 [exp] 1077 / 0 AT1G65580 733 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10011041 [exp] 129 / 1e-30 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 123 / 9e-29 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 113 / 2e-26 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 113 / 2e-25 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10040107 [exp] 98 / 2e-20 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177400 [exp] 1671 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.008G079300 [exp] 1601 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G006900 [exp] 1297 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.007G145100 [exp] 1258 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.008G155700 [exp] 113 / 1e-25 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G101700 [exp] 110 / 3e-25 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 107 / 6e-24 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.015G032200 [exp] 107 / 6e-24 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 105 / 5e-23 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G063500 [exp] 100 / 3e-21 AT1G71710 631 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10041607 pacid=23146600 polypeptide=Lus10041607 locus=Lus10041607.g ID=Lus10041607.BGIv1.0 annot-version=v1.0 ATGGATGACATCAGCGACCTCTTTTTCTCCGGTCCTCCCCCCGACGACGATCACCACCACCTCCTCAGTCGCCGTCAGGATGTCAACACCGATTCCTCCT ACTCGTCCCCTAAAATCTTCGACCGCTACTTCTCCTCCTCTTCCGACGACGAGGCCGAGGGCGATTACTCACGCCCGTCTAATTCCTCTTCTATGGAAGC TACCAGCAAGCGTCTTGATTACATGATCCAGTTTCTTGACCGGAAAATCTCCTCTGATAACGACCCCAACAACTGTTCACTCCCGCTTGACCTTGATGTC GGCAATAACAACAACAACAACAAGTCGCCCTCCTCATCTTCTTTAACGCCACTGCCGGAATTCGTCGGGAGAGGAGGCGGGACCGGGATTTTCAGGCTTC CAGTTCGCGCTGCGCTTCATCCTTCTCGTCCTCCCAGTCTAGAAGTTAGGCCGCATCCTCTGAGAGAAACTCAGATTGGATGTTCCGTGCGGAACATTGT CACATCCAGCTCTCAGCTGTGGGCAGGGAAGGGAGATGGGGGACTCCAGGTGTGGCAATTTCGCGATTTGTATGGAGGAACTGAGGATATAGCGCCGTTT CAAGAGTCTGCGGCCTCTGGATCTGGGGTTCTTTGTTTGGTGGCAGACGAAGGGAGTCGGGTTATTTGGAGTGGGCATAAGGATGGGAGGATCAGGTGCT GGAAAATGGATTCAGTTTCCGATGGCTTCAAGGAATGCCTTTCATGGATAGCTCACCGAGGCCCTGTTCTCTCCATGGTCATTACTAGCTACGGGGACTT ATGGTCTGGTTCGGAGAGTGGTGCTATGAAGATATGGCCATGGGAAGCTATAGAAAAATCATTTTCTTATACACCGGAAGAAAGACATGTGGCTGCAATG TTGGTGGAGAGATCATATATTGACCTTCGGGGCCAATTCAATGTGAATGGGTTGTCGAATGCATTAACATCTGATGTCATGTACTTGCTATCTGACAATT TTAAGGGGAAAGTTTGGAGTGCTAGTTATCTGTCCTTTGCTCTATGGGATGCTCGTTCAAAGGAGTTGCTAAAGTTGTTCAATATAGATGGCCAGTTAGA AAGAATGGATATGGTATCAGGACAAGACTTTACTCTTGAGGAAGATATCAAGGTGAAAATTGTTGCTGGATCCAAGAAAGATAAGGCACAAAACTCATTT GGTTTCTTCCAGCGTTCGAGGAATGCTATAACTGATGCTGTTCGCCGAGTTGCTGCAAAAGGTGGATTTGGAGACGATCGCAGAACTGAGGCAATAACAC TAACATCAGACGGAATAATATGGACTGGCTGTACGAATGGAGCAATTGTTCAGTGGGATGGGAATGGGAATCGTTTACAGGAAATTCAATACCAGTTTGC TGCTGTTCGATGCTTTTGTTCCTTCGGGTCACGTGTATGGGTAGGCTATGTCAGTGGTATGATCCAGGTTTTTGACCTTGAGGGTAATCTGCTTGGAGAG TGGGTAGCTCACAGTAGTGTGGTGACTGAAATGGCTGCGGGTTCTGGTTATGTTTTCTCATTGGCTAATCATGGTGGTATCCGGGGCTGGAATGCCATGG CTCCTGGACCTATTGATGGAATTCTGCGATCAGAATTGGCAGGAAAAGAATTCTTGTATACAAGAATAGAAAATTTGAAAGTTTTGACTGGTACATGGAA TGTAGCACAAGAAAGAGCTAGTCGTGACTCACTTGTGTCCTGGCTAGGTTCTGCAGCAGCAGATGTTGGAATTGTTGTTGTTGGGTTGCAAGAGGTTGAA ATGGGAGCTGGAGTCCTCGCAATGTCGGCAGCAAAAGAAACTGTTGGACTTGAAGGTAGCGCTCTTGGGCAGTGGTGGCTAGATATGATAGGCAAAACAT TAGATGAAGGGTCAACATTTGAGCGTGTTGGTTCTCGGCAGCTAGCGGGGTTGCTCATCTCTATATGGGTTAGGAGTAATTTAAAACCCCATGTTGTGTG TGTTGATGCTGCTGCTGTCCCATGTGGATTTGGGCGTGCAATTGGTAACAAGGGAGCTGTTGGTCTGAGGATCAGAGTTTTTGACCGGATAATATGTTTC ATTAATTGTCACTTTGCGGCACATTTAGAAGCAGTTGGGCGACGCAATGATGACTTTGATCATGTTTATCGAACCATGTCATTTGGCCGATCATCAAGCC ACTTTGCTGGTGCAGCTGGTATGGTGCCGTTCCTGGTCTTCTCTTGCACGCTTGCCTGCTCAATGTGTTTATTTTGGCTTGTTTATAGATCTGGATTGCT ATTGCTCCTTTCTGTTGCAGTTGGGACTTCATCTGCTGGTCAAATGCTTCGTGGTACAACCGTTTTCAATGGAAGCTCGGCAAATACAATTCCAGAGCTA TCTGAGGCAGATATGGTCGTATTTCTTGGTGACTTTAATTATCGGCTGGGTAATATTTCCTATGACGAAGCAAGGGATTTTATTTCTCAAAGATGCTTTG ATTGGCTTAAAGAAAGGGATCAGCTACACTCAGAAATGAAAGCTGGGAATGTTTTCCAAGGAATGCGTGAAGCAGTCATTAGATTTCCTCCTACATACAA GTTTGACAAGCACCAGCATGGTTTAGCAGGATACGATTCTGGTGAAAAGAAGCGTATTCCGGCCTGGTGTGACCGAATACTGTACCGTGACAGCCGGTCA GCTGGGGTGTCTGAGTGCAGCTTACAGTGCCCTGTTGTAGGTTTGATTTCGCAGTACGATGCTTGCATGGATGTGACTGACAGTGATCACAAGCCTGTAC GTTGCATCTTTAGTGTCGATATTGCAAAAGTAGATGAGTCTGTAAGAAGACAAGAACTTGGAGACATTATGAACTCAAATGTGGAAATCAGATCCATACT AAAAGAGCTATGCAAGATTCCGGAAACTATTGTTAGCACAAATAACATAATCCTGCAAAACCTGGACAGAACCATTTTACGGATGACAAATAAATCAGAT CAATTTGATGCTCTGTATCAAATCGTCTGCGAGGGCGAGTCAACTGTTGATGAGAATGGACAAGCTGGTGATCATCATCCAAGGGGTTCCTTTGGGTTTC CTCAGTGGCTTCAGGTAATTCCTGCGGCAGGCGTGATTAAACCGGGAAACATTGCAGAGATTGGGGTCCACCACGAGGATTTCTCAACCGTCGAGGAGTT TGTGGACGGTGTCCCGCAGAACTCCTGGTGTGAAGACATCAGAGACAAGGAAGTTATATTGGTCGTGAAAGTACGAGGCACTTACAACACGACCGAGACT AGAAATCATAGGATTCGTGTGCGCCATTGTCGTTCATCACGAGTTGATCCAAATGTTGACAGCAATAAGTCGCAGGGGAGTCTTCTCCACCGGGCTGATT ATCAAAACCTTAGCAGCTCGTACGATGTGGTGAACCGCCTTCGGAAGTTGAATAGTCCGTAA
AA sequence Show only first row Show all	>Lus10041607 pacid=23146600 polypeptide=Lus10041607 locus=Lus10041607.g ID=Lus10041607.BGIv1.0 annot-version=v1.0 MDDISDLFFSGPPPDDDHHHLLSRRQDVNTDSSYSSPKIFDRYFSSSSDDEAEGDYSRPSNSSSMEATSKRLDYMIQFLDRKISSDNDPNNCSLPLDLDV GNNNNNNKSPSSSSLTPLPEFVGRGGGTGIFRLPVRAALHPSRPPSLEVRPHPLRETQIGCSVRNIVTSSSQLWAGKGDGGLQVWQFRDLYGGTEDIAPF QESAASGSGVLCLVADEGSRVIWSGHKDGRIRCWKMDSVSDGFKECLSWIAHRGPVLSMVITSYGDLWSGSESGAMKIWPWEAIEKSFSYTPEERHVAAM LVERSYIDLRGQFNVNGLSNALTSDVMYLLSDNFKGKVWSASYLSFALWDARSKELLKLFNIDGQLERMDMVSGQDFTLEEDIKVKIVAGSKKDKAQNSF GFFQRSRNAITDAVRRVAAKGGFGDDRRTEAITLTSDGIIWTGCTNGAIVQWDGNGNRLQEIQYQFAAVRCFCSFGSRVWVGYVSGMIQVFDLEGNLLGE WVAHSSVVTEMAAGSGYVFSLANHGGIRGWNAMAPGPIDGILRSELAGKEFLYTRIENLKVLTGTWNVAQERASRDSLVSWLGSAAADVGIVVVGLQEVE MGAGVLAMSAAKETVGLEGSALGQWWLDMIGKTLDEGSTFERVGSRQLAGLLISIWVRSNLKPHVVCVDAAAVPCGFGRAIGNKGAVGLRIRVFDRIICF INCHFAAHLEAVGRRNDDFDHVYRTMSFGRSSSHFAGAAGMVPFLVFSCTLACSMCLFWLVYRSGLLLLLSVAVGTSSAGQMLRGTTVFNGSSANTIPEL SEADMVVFLGDFNYRLGNISYDEARDFISQRCFDWLKERDQLHSEMKAGNVFQGMREAVIRFPPTYKFDKHQHGLAGYDSGEKKRIPAWCDRILYRDSRS AGVSECSLQCPVVGLISQYDACMDVTDSDHKPVRCIFSVDIAKVDESVRRQELGDIMNSNVEIRSILKELCKIPETIVSTNNIILQNLDRTILRMTNKSD QFDALYQIVCEGESTVDENGQAGDHHPRGSFGFPQWLQVIPAAGVIKPGNIAEIGVHHEDFSTVEEFVDGVPQNSWCEDIRDKEVILVVKVRGTYNTTET RNHRIRVRHCRSSRVDPNVDSNKSQGSLLHRADYQNLSSSYDVVNRLRKLNSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	0	1
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10007999 [exp]	2.8	0.8487
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	8.5	0.7883
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	10.3	0.8498
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	16.4	0.8007
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	17.8	0.8039
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006450 [exp]	21.3	0.7182
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	21.8	0.8174
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10036938 [exp]	24.0	0.7813
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	25.1	0.7965
AT2G48060			unknown protein		Lus10008175 [exp]	28.5	0.7988

Compare expression of checked genes

Lus10041607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.