Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 296 / 1e-89 Protein kinase superfamily protein (.1) AT1G55200 285 / 2e-85 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 283 / 5e-84 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G38560 253 / 1e-73 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24540 248 / 2e-73 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G52290 243 / 1e-71 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G23540 246 / 8e-71 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 245 / 1e-70 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G24550 244 / 1e-70 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G07870 235 / 9e-70 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024111 [exp] 1252 / 0 AT5G56790 317 / 2e-98 Protein kinase superfamily protein (.1) Lus10036100 [exp] 380 / 7e-122 AT1G55200 201 / 1e-55 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 296 / 7e-91 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 294 / 6e-89 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 293 / 7e-88 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 291 / 3e-86 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 251 / 4e-73 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 249 / 7e-72 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10022129 [exp] 249 / 7e-72 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189850 [exp] 731 / 0 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 714 / 0 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.001G224800 [exp] 470 / 5e-157 AT5G56790 249 / 1e-73 Protein kinase superfamily protein (.1) Potri.005G185500 [exp] 311 / 4e-96 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 293 / 4e-88 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 289 / 1e-86 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 282 / 4e-84 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G183000 [exp] 249 / 3e-73 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 249 / 1e-72 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 249 / 3e-72 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041608 pacid=23146767 polypeptide=Lus10041608 locus=Lus10041608.g ID=Lus10041608.BGIv1.0 annot-version=v1.0 ATGGGGTTTTCTGCTGCTTCTCAAAGGTTCCTCAAAGTGATGGCCATGGTATGGGCTGGAAGCCAAGTTACTAAAGTCTTTCGAGCAGGAGGCTTTTTCA CACTGTTTAACCGAAGAGTTTCCAACTTGTTCAGGGCTCTTGCTCTTGCACCTTTTGTAGACAAAGGATTGTCATGGTTCACTACCAAATTCGGGTTTGA GACTCGAGGGAAGAAACAGCTGAAGCACAAGTTTGAAGCTGAAGTCATCATCATCATGTCTGTGGGAGGAAGGCAAAGAGTGGTTATCATCCAGGATGCA TCCAGGGATGTTAATCCAGGAACAATCAGATTGATCCTTCAGCAATTCTCTTTGAAGGCTGCTGACGTCTTGATCCTCTATGGAGCTCTTCACCAAGTTA CCAATCCCATGGGATACAAGATCAAGGTGGACTCGAGCTCAGTGTTTGGGTTAAACCCCAAGCTGATTGCAGATGAAGTTTCAAGGAAGAAACTTGATTA CTCTAACAATGAGGAAATCATCACAATTTCCAAGCTTTGTCAGCTGGAACAGATTGAGTTCCGTGTGGAGGTGCATGCCGGACCAACTCCCAAGGTGATT GCTATGAAGGCTGCAAAAACTTTAAAGCCGACATGGCTCATTCTTGACAGGCAAATGAAGAAAGACCAAGCTTACTTCACTGAGAAGCTTTCATGCGGAA TATCAAGAATAAAGCGTGATAATACCATTGAAGAATTGAGACAGCCGAAACCAAAAATGGCACCTAAACCGAAAGCTGCAGAAAAGGGAAGCGAGGACAA CACTAGATCAGGGCAAGTTACGTACGATGAAATGATACCAGGAAGTCCAGAGAATGGAAAAGAAGAAGAAGGTCGATCTCGAAGCCGCAAGAAGTCTGTT CTTGGTATGTCATCAATAGACGAACCATCCACCCCACCTGTAACATCAACTACAGCTCGTCTTTTCTACGAGTCTTCATGTTCTGGTACTACTGGACCAA CGAGAGTCTCTGCAGATCCTGAAGAGGAGGAGAAGTCCACCCTTGCTGAAAGAGAAGCAGCAAATAATGCTAAGCCTCCAGTGTCACCGAGTGAAATCCA AGAGGAAGAAGTTACAGAAGACAGCAGTCCTAAAGTGGAGGAGCCCTTTAGGAACTCCATTTGCTCAATCTGCAACAATGAGAGGCCAAAGACAGAATGG AAGAGAGACTTCACGTACTCTGAGCTACATTCCGCTACTGAAGGATTTTCGGTGAAGAATTTCTTGTCAGAAGGAGGGTTTGGCTCTGTCTACAAAGGAG ATATCAATGGGATGAAGGTTGCTGTGAAGCAACACAAGAGTGCCAGCCTGCAGGGGGAGAAAGAATTCAAAGCAGAAGTTATGGTGCTGAAGAGAGTAAG ACATGAGAATTTAGTGACGTTGTTAGGTTCGTGTGCTGAAGGAAGCCATAGATTGCTTGTGTATGAGTATGTCTGCAATGGTTCTCTGGATCAACACCTA TCAAAACACACCCGAAAGCCTCTCAGTTGGGAAATGAGAATGAAGATAGCCATTGGAGCTGCAAAAGGGTTACAGTATTTGCATGAAAACAACATTATCC ACAGAGATATGAGACCAAGCAACATCCTCATAACCCATGATTATGAGGCAATGCTAGGGGATTTTGGCCTGGCAAGAACACAGCAAGAAGATCAAGAACT GTCAACGGAGACAAATGTGGTCGGAACACTGGGATACTTGGCACCAGAATATGCAGAATATGGGAAAGTATCAACCAAGACAGATGTGTACTCATTTGGG ATAGTGCTGTTACAACTGATCACTGGACTCAAAACCACAGACAAGAAACTTGGTGGGAAAAGTCTAGTGGGATGGGCAAGACCACTACTGAAAGATAAGA ATTACCCAGACTTGATTGACCAGAGGATCTTGGACACCCACGATGTGCATCAGCTATTCTGGATGGTGAGAGTAGCAGAGAAGTGCTTGAGCAAGGACCC TAAGAAAAGATTGTCCATGGAAAAGGCAAGTGTGGTTTGTGCATTGGATCACATAATAGAAAGTGAGACGGGGTGCAGCAGCATAAAAGAGTACTCCCCA GTACCTTCGGATACGATAAGCAGCACTCGAGGTTCCAGTGAAGATGATTACACTGGGGGATCCAGCGTTTCAACTAGCGGAACCAGCAGCGTAGCAAGTT TGCCACTTTTCCTTCCACCATTATTGCAGTCCTGTACTAGTATCAGGAATCCACCAACTCCGCCAATGGAAACCACTTGTGCAGCTCCAACACAACAACA ATATGAGAGTTGGTACGAAATATGA
AA sequence Show only first row Show all	>Lus10041608 pacid=23146767 polypeptide=Lus10041608 locus=Lus10041608.g ID=Lus10041608.BGIv1.0 annot-version=v1.0 MGFSAASQRFLKVMAMVWAGSQVTKVFRAGGFFTLFNRRVSNLFRALALAPFVDKGLSWFTTKFGFETRGKKQLKHKFEAEVIIIMSVGGRQRVVIIQDA SRDVNPGTIRLILQQFSLKAADVLILYGALHQVTNPMGYKIKVDSSSVFGLNPKLIADEVSRKKLDYSNNEEIITISKLCQLEQIEFRVEVHAGPTPKVI AMKAAKTLKPTWLILDRQMKKDQAYFTEKLSCGISRIKRDNTIEELRQPKPKMAPKPKAAEKGSEDNTRSGQVTYDEMIPGSPENGKEEEGRSRSRKKSV LGMSSIDEPSTPPVTSTTARLFYESSCSGTTGPTRVSADPEEEEKSTLAEREAANNAKPPVSPSEIQEEEVTEDSSPKVEEPFRNSICSICNNERPKTEW KRDFTYSELHSATEGFSVKNFLSEGGFGSVYKGDINGMKVAVKQHKSASLQGEKEFKAEVMVLKRVRHENLVTLLGSCAEGSHRLLVYEYVCNGSLDQHL SKHTRKPLSWEMRMKIAIGAAKGLQYLHENNIIHRDMRPSNILITHDYEAMLGDFGLARTQQEDQELSTETNVVGTLGYLAPEYAEYGKVSTKTDVYSFG IVLLQLITGLKTTDKKLGGKSLVGWARPLLKDKNYPDLIDQRILDTHDVHQLFWMVRVAEKCLSKDPKKRLSMEKASVVCALDHIIESETGCSSIKEYSP VPSDTISSTRGSSEDDYTGGSSVSTSGTSSVASLPLFLPPLLQSCTSIRNPPTPPMETTCAAPTQQQYESWYEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	0	1
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	1.0	0.9317
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	3.2	0.9242
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	4.7	0.8810
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	6.6	0.9190
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	7.2	0.8923
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	7.3	0.9207
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	8.1	0.9109
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	8.7	0.9186
					Lus10000019 [exp]	10.2	0.8811
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	11.2	0.9016

Compare expression of checked genes

Lus10041608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.