Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54380 406 / 4e-140 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) AT3G06290 171 / 2e-46 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024110 [exp] 731 / 0 AT3G54380 412 / 1e-142 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10034008 [exp] 163 / 2e-43 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10012769 [exp] 140 / 1e-35 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035700 [exp] 488 / 5e-172 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Potri.010G028200 [exp] 153 / 4e-40 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G213700 [exp] 45 / 0.0001 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10041609 pacid=23146867 polypeptide=Lus10041609 locus=Lus10041609.g ID=Lus10041609.BGIv1.0 annot-version=v1.0 ATGGAGCGAAACAAGAATCGCCATTACCAACGTCAAGGCCCTTCTTTTCCTTCTTCGTCTTCTTCCTCCAGGAACTCCACTAATATGTCACGATTTGAAC GGGGATCAGCGATATCTAGTACAAGAAGAGCGGATTCTGGGGAAGGCCAGGAGTCGGAATGGAAACCCAGAAAGCAATCGGCGACAAACTCCAAAACCCT GAATGAAAGTTCCAAGGGAGCTGTTGGGGAAGAGAGCCCATCCGAATATCTCACACTAATTGGGACTTGCCCTTTTATGTGCCCAGAGGGTGAAAGGGCT CAAAGGGAGCGGCTAAGAGACCTAGCTGTTTTTGAAAGACTCCATGGGAATCCTGCCAAAACATCTTCCAGCTTAGCTGTCAAGAAGTTCTGCAGGACCA TATCTACTATGGAGGGAAAAGAATCGGATCTGCGACCGCTACCTGTCCTTGAAGAGACACTGACCTACCTACTCACATTGTTGGACTCGACAAATCACTC ATTTGAAGCGGTTCACGACTTCATCTTTGATAGAACAAGGTCCATAAGACAAGATCTCAGCATGCAGAACATTATGAACAATAAAGCAATCTACATGTAC GAGAAAATGGTAAAATTTCACGTCATGTCTCATCTCAAGCTCAGACATCGCAGCAACAGTCCAACCACTTCTTCAACCCATTACCTCAACATGGAACAGC TCACAAAGGCTATAACATCACTATACAATCTGTACGATGCGAATCGAGACAATTCCAATTCGGTTCACAAAAGTGAAGCAGAGTTTCGTTCACTATATGT TCTGCTTCATATAGACTCAAGAAATCAACCAACGGGGGAATCACTTGCTTTATGGTTTCGCCGGATTCCTCGATCGATCATCCAGTCTAAAGAAATGTGC TTTGCCCGCAGAGTTCTACGGTCATTTCGACTGGGGAATTATAAGCAGTTTCTTTCGACAATAGCTGCTGAAGCATCATGTTTACAGTACTGTATTCTTG AACCGTATATCAACGAGGTTAGGGCATTTTCACTGTCATGTATCAACAATGTTTGCTACAAGCTTCATCCTTACCCTCTGGATCGCTTGTCAAATGTCTT GATGATGAAGGAAGCAGATGTGGAACTTCTGTGCAAAGCTTGTGGTCTTGAGACATCCACAGACGAGAATGGGAAGAAGTGGTTGCCTACAAAGCAAGCA ACTTTCACTTCTCCCAAAGACGGTCAAACCTTTCCGGTTTTGGGTTTAGAACCATTTGAGCAGCAATCCTAA
AA sequence Show only first row Show all	>Lus10041609 pacid=23146867 polypeptide=Lus10041609 locus=Lus10041609.g ID=Lus10041609.BGIv1.0 annot-version=v1.0 MERNKNRHYQRQGPSFPSSSSSSRNSTNMSRFERGSAISSTRRADSGEGQESEWKPRKQSATNSKTLNESSKGAVGEESPSEYLTLIGTCPFMCPEGERA QRERLRDLAVFERLHGNPAKTSSSLAVKKFCRTISTMEGKESDLRPLPVLEETLTYLLTLLDSTNHSFEAVHDFIFDRTRSIRQDLSMQNIMNNKAIYMY EKMVKFHVMSHLKLRHRSNSPTTSSTHYLNMEQLTKAITSLYNLYDANRDNSNSVHKSEAEFRSLYVLLHIDSRNQPTGESLALWFRRIPRSIIQSKEMC FARRVLRSFRLGNYKQFLSTIAAEASCLQYCILEPYINEVRAFSLSCINNVCYKLHPYPLDRLSNVLMMKEADVELLCKACGLETSTDENGKKWLPTKQA TFTSPKDGQTFPVLGLEPFEQQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10041609 [exp]	0	1
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	6.3	0.9073
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	6.5	0.9432
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	7.1	0.9451
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	10.8	0.9114
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	12.0	0.9241
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	15.6	0.9159
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	16.9	0.9312
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	17.0	0.8973
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	19.9	0.9084
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	21.5	0.9101

Compare expression of checked genes

Lus10041609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.