Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12390 229 / 6e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 217 / 3e-72 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1) AT3G49470 209 / 8e-69 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT4G10480 199 / 3e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT1G33040 189 / 3e-61 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024109 [exp] 249 / 4e-86 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10026133 [exp] 231 / 1e-78 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10008687 [exp] 218 / 8e-70 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10015579 [exp] 204 / 8e-67 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10032927 [exp] 204 / 8e-67 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034400 [exp] 258 / 3e-88 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G190800 [exp] 254 / 8e-87 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 233 / 1e-78 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.015G003300 [exp] 209 / 1e-68 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 199 / 6e-65 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10041610 pacid=23146676 polypeptide=Lus10041610 locus=Lus10041610.g ID=Lus10041610.BGIv1.0 annot-version=v1.0 ATGACGGCCGAGACTCAGGAGCAGCTACTCGCCTCTCAGCTCGAAGCTCAAAAGCTTCAAGATAAATACATGGTCGTGTGCAACGTAGTTGTGAAATATA TACTCTGCCTCAGACAACTTGGTGATGCAAGTGGTAGATCAAAACAAACAAGAAGTGAAAAGAAGAGCCGCAAAGCAATGTTGAAGCTGGGAATGAAACC CATGACTGGTGTCAGTCGGGTTACCGTCAAAAAGAGCAAGAACATATTGTTTGTGATCTCAAAGCCTGATGTCTTCAAGAGCCCGACATCAGACACATAC ATAGTCTTTGGAGAGGCTAAGATTGAAGACATAAGCTCACAGCTACAGTCTCAAGCAGCAGAGCAGTTCAGGGCTCCTGATCTGAGTCATTTGAGTGCAA AACCTGAGACTTCTGCCATGGCTCAGGATGACGATGATGATGTAGATGAAACTGGAGTGGAGCCCAAGGACATTGAGTTGGTGATGACACAGGCAGGAGT CACAAGGGCCAAAGCTGTGAGGTCTCTCAAGGCGGCTGATGGAGACATTGTTTCTGCCATCATGGAGCTCACCACCTGA
AA sequence Show only first row Show all	>Lus10041610 pacid=23146676 polypeptide=Lus10041610 locus=Lus10041610.g ID=Lus10041610.BGIv1.0 annot-version=v1.0 MTAETQEQLLASQLEAQKLQDKYMVVCNVVVKYILCLRQLGDASGRSKQTRSEKKSRKAMLKLGMKPMTGVSRVTVKKSKNILFVISKPDVFKSPTSDTY IVFGEAKIEDISSQLQSQAAEQFRAPDLSHLSAKPETSAMAQDDDDDVDETGVEPKDIELVMTQAGVTRAKAVRSLKAADGDIVSAIMELTT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12390			Nascent polypeptide-associated...		Lus10041610 [exp]	0	1
AT2G19730			Ribosomal L28e protein family ...		Lus10037609 [exp]	2.8	0.8878
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	3.7	0.8836
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	4.6	0.8671
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	7.1	0.8485
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	8.0	0.8612
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10039932 [exp]	9.9	0.7690
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	10.4	0.8399
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	10.9	0.8360
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	11.7	0.8076
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	14.4	0.8079

Compare expression of checked genes

Lus10041610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.