Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 240 / 4e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 234 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07010 231 / 6e-73 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT1G13420 229 / 1e-72 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03760 228 / 3e-72 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT5G43690 224 / 6e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 224 / 1e-70 SOT7 sulphotransferase 7 (.1) AT2G14920 216 / 2e-67 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1) AT5G07000 214 / 2e-66 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT1G18590 213 / 4e-66 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003070 [exp] 255 / 1e-82 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 236 / 2e-75 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 235 / 8e-75 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008673 [exp] 235 / 1e-74 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10033718 [exp] 233 / 6e-74 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 230 / 2e-73 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026147 [exp] 226 / 2e-71 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10033716 [exp] 226 / 2e-71 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 226 / 3e-71 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193400 [exp] 260 / 1e-84 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 256 / 3e-83 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G188800 [exp] 249 / 1e-80 AT5G07010 325 / 2e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189100 [exp] 247 / 1e-79 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 241 / 3e-77 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189066 [exp] 240 / 3e-77 AT5G07010 324 / 5e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 239 / 1e-76 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.001G036700 [exp] 236 / 2e-75 AT5G07010 270 / 1e-88 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.017G100500 [exp] 229 / 6e-73 AT1G13420 221 / 2e-70 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.010G138501 [exp] 229 / 8e-73 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10041611 pacid=23146801 polypeptide=Lus10041611 locus=Lus10041611.g ID=Lus10041611.BGIv1.0 annot-version=v1.0 ATGGCTTCAAATAACGGCTCCTTATCTGAGCCTGCAGGGGACTACCCTCTGGACAAACTCCCAAAAGAGAGTTTCTGGGGAGGCTACGAACTGTATCAAT GGCAAGGCACCTGGTTTTCGGCCAGGATTGCCAATGGAGCCATGGCGTTCCAATCCAATTTCCAAGCACGGGACGACGACATCATCATTGCTTCCTTCAT GAAAACTGGATCCACCTGGCTCAAAGCACTCTGTTTCTCCATCCTCAACACACCAACCAAGTGCAAAGTCCCAAATGGTACTGAACAGGTCGACAATGGA GAGAAGATTAATGGTGATGATCAAAAGAAAGAAGAGGAAATCGGAGATGACCCTTTCGCTAAAAACCATCCGGCTTTCTACGTCAGGACCATGGAAGTTC AGGTCTACACCCAAACTCCGTTTCCCGACCTCTCAGAAATGGCTCCGCCAAGGCTATTGCACACCCACCTGATGTACAACACCTTGCCGGAATCAATCAA GAAATCGGGCTGCCGGATTGTGTACATCACCAGGAACCCAAAGGACACATTGGTATCACTGTGGCATTTCCTGAAATCGAGGATGAAACCGGAACATCAG GAGGCCTGCGCTTTCGACGAGGAGGTAGTGGAAGGGTTCTGCAGAGGCGTTGTCCCGAGCGGGCCTTTCTTCGAACACGTGGTGGGCTACTGGAACGAGA GCCTGAAAAATCCTGACAAGATACTGTTCCTGAAATACGAGGACCTGAAGCGAGATCCGATTGCGGAAGTGAAGAAGCTGGCCGCGTTTATAGGGAAACC GCTGGAATCGGACGAAGAAGCAGAGAAGGTTGTGAAAATGTGCGAACTGGAGAGGCTGAAAGGGTTGGATGTGAACAAAACAGGGGTGGATCCGTGGGTT AACATGCCCAACAGTACGTTTTTCCGGCGGGGAGTGGTCGGCGATTGGAAGAACTACTTCAGTGCAGAGATGGGGAGCAAGGTTGATAGAATTACGGAGT CAAAGCTGGAAGGCACTGGGCTTGACATTTCTGGGTCCACTGAATTAATTGAAGAGAAAGATGGTGTGCAAACTGATCGTGTGGCAGTTGCTAATTAG
AA sequence Show only first row Show all	>Lus10041611 pacid=23146801 polypeptide=Lus10041611 locus=Lus10041611.g ID=Lus10041611.BGIv1.0 annot-version=v1.0 MASNNGSLSEPAGDYPLDKLPKESFWGGYELYQWQGTWFSARIANGAMAFQSNFQARDDDIIIASFMKTGSTWLKALCFSILNTPTKCKVPNGTEQVDNG EKINGDDQKKEEEIGDDPFAKNHPAFYVRTMEVQVYTQTPFPDLSEMAPPRLLHTHLMYNTLPESIKKSGCRIVYITRNPKDTLVSLWHFLKSRMKPEHQ EACAFDEEVVEGFCRGVVPSGPFFEHVVGYWNESLKNPDKILFLKYEDLKRDPIAEVKKLAAFIGKPLESDEEAEKVVKMCELERLKGLDVNKTGVDPWV NMPNSTFFRRGVVGDWKNYFSAEMGSKVDRITESKLEGTGLDISGSTELIEEKDGVQTDRVAVAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45070			P-loop containing nucleoside t...		Lus10041611 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	2.4	0.9190
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	2.4	0.8950
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	4.4	0.8438
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	5.5	0.9045
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	7.3	0.8768
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	9.4	0.7716
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	11.6	0.8779
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10021809 [exp]	13.0	0.8861
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	16.0	0.8569
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	16.0	0.8693

Compare expression of checked genes

Lus10041611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.