Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13860 448 / 4e-157 ELC-LIKE, ATELC-LIKE ELCH-like (.1) AT3G12400 269 / 2e-86 ELC, ATELC Ubiquitin-conjugating enzyme/RWD-like protein (.1) AT2G38830 112 / 2e-27 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024108 [exp] 705 / 0 AT5G13860 502 / 6e-177 ELCH-like (.1) Lus10026129 [exp] 558 / 0 AT5G13860 485 / 2e-171 ELCH-like (.1) Lus10008690 [exp] 555 / 0 AT3G12400 482 / 4e-170 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034200 [exp] 535 / 0 AT5G13860 457 / 4e-161 ELCH-like (.1) Potri.003G191100 [exp] 497 / 1e-175 AT3G12400 419 / 1e-145 Ubiquitin-conjugating enzyme/RWD-like protein (.1) Potri.002G046200 [exp] 117 / 3e-29 AT2G38830 280 / 9e-93 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF09454 [flax] [poplar] Vps23_core Vps23 core domain CL0208 [flax] [poplar] UBC PF05743 [flax] [poplar] UEV UEV domain
Representative CDS sequence Show only first row Show all	>Lus10041612 pacid=23146668 polypeptide=Lus10041612 locus=Lus10041612.g ID=Lus10041612.BGIv1.0 annot-version=v1.0 ATGGCATCACCACCTACAGGCCCATCGCCTTCGCCGGCAATTCAGCAATTCCTCTCATCGGTCCTCTCTCAGCGCGGCCCCTCCGCCCTCCCTTACAACG AAGACACCAAATGGCTAATCCGGCAACACCTCCTCTCTCTCGTCACCTCTTATCCTTCTCTGGAGCCCAAAACTGCAACCTTCACCCACAACGACGGCCG CTCCGTAAACCTACTCCAGGCTGACGGCACGATTCCTATGATGTTCCAAGGTGTGACCTACAACATACCCGTCATCATCTGGCTCATGGATTCATACCCT CGCTTCCCTCCTTGCGTCTACGTCAATCCAACTCGCGATATGATCATCAAGCGTCCTCACGCCCACGTCAATCCTTCCGGGTTAGTCTCCGTCTCTTATC TCCAGAATTGGATCTACCCTAGCTCTAATTTGCTCGATCTGATTCGTGAATTGAGCTCCGTCTTTGGCCGCGATCCCCCTTTGTACGCCCAACGCCGCCC TAATCCCAACCCTAACCCTAATCATAATCTCAATCCCAATCCCAATCCATCTCCTAGTCCTAGGCCTAGTCAAAGTTATGCAACCGATCCTTCGAGTTTG TCCCACGCATCAAGCTTTGGATCCGTAACAGGGCCTGGACACAGTCCATACCAACGCCCGATGGCTAGGCCTTATCCTCCATCACCGTACGGAAGCGGCG GTGCTACTCCAGCTCCAGCACGGCCACATCAGACCGATGATGCTGCAGAGGTTTACAGAAGGAATGCTATCAATAAAATAGTTGAAATGGCTCATGGTGA TACGTTACAGTTGAGGAAGGCGAGGGAAGCGGAGATGGAGGGGTTATTCAGTGGGCAGGCTGAATTAAGGAGGAGGGAGGAGGTTCTGAACAGGGGATTG AAGGAATTGCAGGATGAGAAAGAAGGGTTAGAAGATCAACTACAGGTTATGTTGATGAACTCGGATGTTGTCGAGGCGTGGGTTAGGGAGAATGAAGGGA AGGTGAAGGGGAATTCGGGGGAGGTGGATGTAGACGGTGCTTTTGAATGTATGGACTCGCTTTCGAAGCAGATGTTAGAATGTACTGCTGCTGATCTAGC CATTGAGGATGTAGTTTATTCCTTGGACAAGGCAGTGCAGGAAGGAGCTTTGCCGTTTGACCAGTACTTGAGGAATGTGAGGTTCTTATCAAGAGATCAA TTCTTTCATCGGGCAGTTGGGGCTAAAGTTAGGGCTGCGCAGATGCAAGCTCAGGTAGCTAATATGGCCTCCAGGATACAGCAATATGCCTCGTGA
AA sequence Show only first row Show all	>Lus10041612 pacid=23146668 polypeptide=Lus10041612 locus=Lus10041612.g ID=Lus10041612.BGIv1.0 annot-version=v1.0 MASPPTGPSPSPAIQQFLSSVLSQRGPSALPYNEDTKWLIRQHLLSLVTSYPSLEPKTATFTHNDGRSVNLLQADGTIPMMFQGVTYNIPVIIWLMDSYP RFPPCVYVNPTRDMIIKRPHAHVNPSGLVSVSYLQNWIYPSSNLLDLIRELSSVFGRDPPLYAQRRPNPNPNPNHNLNPNPNPSPSPRPSQSYATDPSSL SHASSFGSVTGPGHSPYQRPMARPYPPSPYGSGGATPAPARPHQTDDAAEVYRRNAINKIVEMAHGDTLQLRKAREAEMEGLFSGQAELRRREEVLNRGL KELQDEKEGLEDQLQVMLMNSDVVEAWVRENEGKVKGNSGEVDVDGAFECMDSLSKQMLECTAADLAIEDVVYSLDKAVQEGALPFDQYLRNVRFLSRDQ FFHRAVGAKVRAAQMQAQVANMASRIQQYAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	0	1
AT2G25250			unknown protein		Lus10041025 [exp]	1.7	0.9158
AT2G44600			unknown protein		Lus10019505 [exp]	5.7	0.8843
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	5.9	0.8850
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	6.0	0.8932
AT5G42570			B-cell receptor-associated 31-...		Lus10035283 [exp]	8.1	0.8555
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	8.8	0.8908
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	9.9	0.8806
AT4G32020			unknown protein		Lus10005344 [exp]	11.0	0.8907
AT4G29120			6-phosphogluconate dehydrogena...		Lus10012950 [exp]	11.7	0.8691
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	14.0	0.8704

Compare expression of checked genes

Lus10041612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.