Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12750 318 / 3e-107 ZIP1 zinc transporter 1 precursor (.1) AT1G05300 299 / 8e-100 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 296 / 6e-99 ZIP3 zinc transporter 3 precursor (.1) AT1G31260 270 / 4e-88 ZIP10 zinc transporter 10 precursor (.1) AT5G62160 261 / 9e-85 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT4G19680 256 / 5e-83 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT1G10970 256 / 3e-82 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT2G04032 254 / 3e-82 ZIP7 zinc transporter 7 precursor (.1) AT4G19690 253 / 4e-82 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT4G33020 207 / 3e-64 ATZIP9, ZIP9 ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041647 [exp] 592 / 0 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10024107 [exp] 589 / 0 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10040615 [exp] 280 / 3e-92 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10006935 [exp] 261 / 5e-85 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014062 [exp] 261 / 6e-85 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10014063 [exp] 241 / 3e-77 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10019854 [exp] 226 / 2e-72 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10031307 [exp] 125 / 1e-34 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10031099 [exp] 108 / 2e-28 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006800 [exp] 393 / 1e-136 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 388 / 3e-135 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G173300 [exp] 367 / 3e-126 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 350 / 1e-119 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 320 / 3e-108 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G134300 [exp] 306 / 2e-102 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.015G117900 [exp] 300 / 3e-100 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 290 / 8e-97 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.010G135400 [exp] 259 / 2e-84 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1) Potri.006G006900 [exp] 194 / 8e-61 AT1G05300 187 / 2e-58 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10041613 pacid=23147035 polypeptide=Lus10041613 locus=Lus10041613.g ID=Lus10041613.BGIv1.0 annot-version=v1.0 ATGAATCAGTGGCGGCGTTTCTGTTCTGTTTTATTTATCCTCTTCCTCCTTGTGATCCCGCCGACACTTGTGTTGGGGGACTGCACGTGCGACGCCGACG AGGACTCCGACAGAGATCGTTTGGTGGCGCTGAGGTACAAGGTGGCAGCGATCGTGTCGATCCTGGTAGCGGGGGCGGTAGGAGTTTGCTTGCCTGTGTT GGGCCAGAAAGCGATCCCTGCTCTGCATCCTGATAACAACGTCTTCTTCATAGTGAAGGCGTTCGCGGCAGGGGTCATACTCTCCACTGGTTTTATCCAC GTTCTTCCCGACGCTTTCGAGAACCTCACCTCGCCGTGCCTCGACGAAAACCCCTGGGGTAAATTTCCCTTTGCAGGGTTTATCGCCATGGTTGCGGCCA TGGGGACTCTGGCCATCGATTCCTTTGCCACTTCCTACTATACCAGGTCGCATAATAAGGGTTCAGCTCTGTCGCCAGAGAGGATCACAGATGAAGAGAA GGACGGTGGGCACGTGCAGGTCCACACCCACGCCACTCACGGCCACTCTCACGGCGCTGTTTTCGCTGCTGGCGACGAGGGTCAAGTGCTAATTCGCCAC AGAGTTATCTCCCAGGTATTGGAAGTGGGAATAGTGGTACACTCAGTGATCATAGGCATATCATTGGGAGCATCTGAAAGTCCCAAAACAATTCGTCCTC TGGTTGCTGCTCTGTCTTTTCATCAATTCTTTGAAGGAATGGGACTTGGAGGCTGCATTTCTCAGGCAAAGTTCAAGTCGAGAGTTGTGGCGGTGATGGC ATTCTTCTTTTCGCTAACAACTCCTCTGGGAATTGCGATTGGATTTGGGATATCGAACGTGTACAAAGAGAACAGTCCAACTGCTCTGATAGTGGAAGGG ACATTCAATTCAGCGTCAGCTGGTATTTTGGTATACTTAGCATTGGTGGATCTTTTGGCTGCAGATTTCATGAACCCTAAAGTACAGTCCAGTGGACGCC TTCAAATTGGCGTCCACATCGCTCTTCTGTTGGGCGCTGGGTTCATGTCTTTGCTCGCCATTTGGGCTTAG
AA sequence Show only first row Show all	>Lus10041613 pacid=23147035 polypeptide=Lus10041613 locus=Lus10041613.g ID=Lus10041613.BGIv1.0 annot-version=v1.0 MNQWRRFCSVLFILFLLVIPPTLVLGDCTCDADEDSDRDRLVALRYKVAAIVSILVAGAVGVCLPVLGQKAIPALHPDNNVFFIVKAFAAGVILSTGFIH VLPDAFENLTSPCLDENPWGKFPFAGFIAMVAAMGTLAIDSFATSYYTRSHNKGSALSPERITDEEKDGGHVQVHTHATHGHSHGAVFAAGDEGQVLIRH RVISQVLEVGIVVHSVIIGISLGASESPKTIRPLVAALSFHQFFEGMGLGGCISQAKFKSRVVAVMAFFFSLTTPLGIAIGFGISNVYKENSPTALIVEG TFNSASAGILVYLALVDLLAADFMNPKVQSSGRLQIGVHIALLLGAGFMSLLAIWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	0	1
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10024107 [exp]	1.0	0.8985
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041647 [exp]	1.7	0.7939
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	6.3	0.8285
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	6.5	0.7770
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	13.0	0.7813
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	18.2	0.7554
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10006935 [exp]	21.8	0.7353
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	22.1	0.7909
					Lus10018015 [exp]	25.3	0.7556
					Lus10002306 [exp]	26.5	0.7153

Compare expression of checked genes

Lus10041613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.