Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16030 516 / 0 HSP70B heat shock protein 70B (.1) AT3G12580 503 / 5e-176 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 491 / 3e-171 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 486 / 2e-169 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 479 / 1e-166 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 435 / 9e-150 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 359 / 2e-119 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 357 / 1e-118 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 329 / 8e-108 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G09590 236 / 4e-72 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002319 [exp] 527 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10023418 [exp] 493 / 5e-173 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10029455 [exp] 492 / 6e-173 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025354 [exp] 488 / 1e-172 AT5G02500 799 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 492 / 8e-172 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 490 / 6e-171 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10005953 [exp] 488 / 4e-170 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 485 / 4e-170 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 481 / 4e-168 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042600 [exp] 518 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 518 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 503 / 7e-176 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 500 / 7e-175 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 496 / 3e-173 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 491 / 8e-173 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 491 / 2e-171 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 488 / 5e-170 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 457 / 4e-158 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 386 / 4e-130 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10041615 pacid=23146709 polypeptide=Lus10041615 locus=Lus10041615.g ID=Lus10041615.BGIv1.0 annot-version=v1.0 ATGGATTTATTCAGGAGATGTATGGAACCCGTGGAGAAATGCCTCCGGGATGCTAAGATTGACAAGGGGCAAATAAACGAAATCGTTTTGGTGGGAGGTT CGACGAGAATCCCCAAAGTCCAGCACCTTCTTCAGGATTTTTTCAACGGGAAGGAGCTTTGCAAGAGCATTAATCCTGACGAGGCTGTAGCCTATGGAGC TGCTGTTCAGGCTGCGATTTTGACAGGAGAAGGGAATCAGAAGGTACAGGAATTACTGCTTTTGGATGTGACTCCTCTCAGCTTGGGTATTGAGACGGCT GGCGGAGTAATGACGGTGTTGATCCCGAGGAACACGACGATTCCTGCCAAGAAAGAGCAGGTGTTCTCGACTTATGCCGACAATCAGCCTGAAGTGTTTA TCCAAGTCTACGAAGGGGAGAGAGCTAGAACTAAAGACAACAATCTGCTTGGTACATTCGAGCTCAAGGGTATTCCTCCAGCTCCTAGAGGAGTCCCTCA AATCAATGTGTGCTTCGACATTGATGCGAACGGGATTGTGAATGTGTCGGCGGAGGACAAGACCGCAGGAGTGAAGAACAATATCACGATCACCAACGAC AAGGGGAGACTGAGCAAGGAGGAGATCGAGAAAATGGTTCAGGAGGCTGAGAGGTACAAGGCGGAGGATGAGGAAGTGAAGAAGAAGGTCGAAGCAAAGA ATTCTTTAGAGAACTACGCATACAACATGAGGAATACGGTAAGGGATGAAAAGTTTGCTGGGAAGTTGGATCCGACAGACAAGCAGAAAATTGAGAAGGC AATTGATGAAGCGATACAATGGTTGGAAGGGAACCAGTTGGCGGAGGTTGATGAGTTTGAGGACAAGCTCAAGGAGCTGGAAGGTTTGTGCAACCCCATA ATTTCCAAGATGTATGGAGGAGCAAGTGCTGGTGGTGAGATGCCAACTGGTGGGTATTCTGCAGCTGCTGGTGGGACGGATGGCTCTGGTGCTGGACCTA AGATCGAAGAAGTCGATTAA
AA sequence Show only first row Show all	>Lus10041615 pacid=23146709 polypeptide=Lus10041615 locus=Lus10041615.g ID=Lus10041615.BGIv1.0 annot-version=v1.0 MDLFRRCMEPVEKCLRDAKIDKGQINEIVLVGGSTRIPKVQHLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGNQKVQELLLLDVTPLSLGIETA GGVMTVLIPRNTTIPAKKEQVFSTYADNQPEVFIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDIDANGIVNVSAEDKTAGVKNNITITND KGRLSKEEIEKMVQEAERYKAEDEEVKKKVEAKNSLENYAYNMRNTVRDEKFAGKLDPTDKQKIEKAIDEAIQWLEGNQLAEVDEFEDKLKELEGLCNPI ISKMYGGASAGGEMPTGGYSAAAGGTDGSGAGPKIEEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10041615 [exp]	0	1
AT3G10020			unknown protein		Lus10002842 [exp]	1.4	0.9165
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10011385 [exp]	2.0	0.8903
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	3.0	0.8974
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	3.2	0.8995
AT5G35320			unknown protein		Lus10027608 [exp]	5.9	0.8692
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	11.0	0.8330
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	12.0	0.8778
AT5G07330			unknown protein		Lus10042036 [exp]	12.4	0.8478
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	13.9	0.8694
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	16.7	0.8648

Compare expression of checked genes

Lus10041615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.