Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024104 [exp] 111 / 2e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041616 pacid=23146887 polypeptide=Lus10041616 locus=Lus10041616.g ID=Lus10041616.BGIv1.0 annot-version=v1.0 ATGGGAGCCATGATCTACTTCTCTTTTCTTATTACCATCCTAGCCTTTCTTACCCTATCCGCTCAAGCTAGAACTTTCCCTGCTTGTTCACGATCCATCC ATCCATATATTCCAGGTGAGGGAAAAGCTGTGGTGATAATCTACGGGAGGAGCTCATCAAGTCTACACCTCCACCTAACGCCCATCCTCTCAGCTGCTAT CAATAATAAAGATATTATGGTGGAAGCACCAGCCAGGCCGAAACCTAAACCACCATCTCCCAAGCCGGCTTCCCCTATATCTGAGCTTACTTCATCATCT ACGTCGTCCAGTACTGATCATGATGATGATGGTGGTATTATGACGATGGTGACCGGTACGGCGGGTACTGTGGAAGGAAGAAAGGTGTTAACACCTCCGC CGTCTCCAAAGCCAGCCTCCCCTACCCATTACGTTGCTCCTCATCATCATCATGAGCGCTCTCCTCCTGCGGAATCCGGCGGATCGTATTACTATTCCTC ATCATCATAA
AA sequence Show only first row Show all	>Lus10041616 pacid=23146887 polypeptide=Lus10041616 locus=Lus10041616.g ID=Lus10041616.BGIv1.0 annot-version=v1.0 MGAMIYFSFLITILAFLTLSAQARTFPACSRSIHPYIPGEGKAVVIIYGRSSSSLHLHLTPILSAAINNKDIMVEAPARPKPKPPSPKPASPISELTSSS TSSSTDHDDDGGIMTMVTGTAGTVEGRKVLTPPPSPKPASPTHYVAPHHHHERSPPAESGGSYYYSSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041616 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	3.6	0.9222
AT1G49330			hydroxyproline-rich glycoprote...		Lus10015036 [exp]	7.4	0.8521
					Lus10033727 [exp]	7.7	0.8972
					Lus10025141 [exp]	8.8	0.9061
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	8.9	0.8992
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	9.8	0.9074
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	10.0	0.8848
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	11.6	0.8999
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	13.2	0.9043
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	13.3	0.9052

Compare expression of checked genes

Lus10041616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.