Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16070 416 / 6e-144 TUB AtTLP8 tubby like protein 8 (.1.2) AT2G18280 75 / 2e-14 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 68 / 3e-12 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G25280 66 / 6e-12 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G47270 66 / 1e-11 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G76900 65 / 3e-11 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G53320 63 / 1e-10 TUB AtTLP7 tubby like protein 7 (.1) AT3G06380 62 / 2e-10 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 62 / 3e-10 TUB AtTLP11 tubby like protein 11 (.1) AT1G43640 59 / 2e-09 TUB AtTLP5 tubby like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024102 [exp] 719 / 0 AT1G16070 422 / 3e-146 tubby like protein 8 (.1.2) Lus10018884 [exp] 70 / 1e-12 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10012803 [exp] 69 / 2e-12 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10010645 [exp] 69 / 2e-12 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10033977 [exp] 68 / 3e-12 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10010833 [exp] 68 / 4e-12 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10028579 [exp] 68 / 4e-12 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10014299 [exp] 68 / 5e-12 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10034106 [exp] 67 / 7e-12 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041400 [exp] 526 / 0 AT1G16070 436 / 3e-152 tubby like protein 8 (.1.2) Potri.003G185401 [exp] 89 / 3e-21 AT1G16070 57 / 1e-10 tubby like protein 8 (.1.2) Potri.005G192300 [exp] 73 / 8e-14 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.011G109300 [exp] 72 / 2e-13 AT1G53320 504 / 5e-180 tubby like protein 7 (.1) Potri.002G068200 [exp] 71 / 5e-13 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 70 / 6e-13 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.010G031000 [exp] 70 / 7e-13 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.008G195200 [exp] 70 / 9e-13 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G121600 [exp] 69 / 1e-12 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.001G390200 [exp] 68 / 2e-12 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family
Representative CDS sequence Show only first row Show all	>Lus10041617 pacid=23147008 polypeptide=Lus10041617 locus=Lus10041617.g ID=Lus10041617.BGIv1.0 annot-version=v1.0 ATGGCCAAATTGGACAGACCCACCAACAACATTCGACCCAATCACCACCACCACAGCTGCAGCGACGGAGACGTTCTCGCTGCAGCTAGAGCTTTCACGG CGGACAACAAAGAGAACATCTGCTGCATCAACGGCGACAAGGATAATAAGGAGAACGTTAATATTTCTGTTATAGGAAATTCAAATTCAAACGCAAAGCC TTTGTCTTTGTCTTGTACCAACGGCCCTGTAGTAGTTAGCTCAGGTATGCAGCAGAAGAAGAAGTCTCTATCTACGGGGAGAGTAGTTTTAAAGGCGTCG TCGCTGCAGCTTTGTATGCAGATGAACGAGCCAGATAGGGCTTTTATGCCCAAGATTTGGGACTCCTCTTGTTTTCCTCCAGCTGCTGAATCTGAAGAAC AACACTCTTCCTCTTTGAACATTTGGGACTATTCCGATTCTGAGGCTGCTCCTGCTTCTTCATGGTCCACTCTCCCCAATAGGGCTTTGCTGTGCAGGCC ATTGCCACTGGATGTTGAGAAATGCACTTGTGTCATAGTTAAAGAATCTTCTCCTGATGGTTTAGATGGTGGCACTCTCTACTCCCTTTATACCAATGAA GGGCATGGGAGGCAGGATAGGAAGCTGGCTATGGCCTACCAGAGGCGTAATGGTGGGAGGTCTGAGTTTATAGTTGCGCAGAAACTGAAAGGATTATTGT CTTGTTCAGATGACAGCTTTGTTGGGAATGTCACTGCTAATCTCATTGGTTCCAAGTACCACATATGGAATCAGAATCAGATTCAGGTTCCTAATAGTTC AGGCAAACAGGGGGGGAATCCGCTTCTAGGTGTTGTCACGTTTGTACCTACCATTGGCACATGGACTGGAAGTTACAGAAAGATGAAAGCATATATCCCC AAGCATGAGTCTATGCTGCTCAAGAACAATACTCAGGTTCAGCATATCAATGGTCTGCCAAAGGACTGGGAGGAGAGGATGAACAAAGTCTACAAGCTAC ATTCCAGGATACCTCACTACAACACTGTGATAAAGCAGCATGAGTTAGACTTTAGAGACGGGGGAAAAGCTGGACCAAAGATCCAAAGCTCGGTCAAGAA CTTCCAGCTGACGTTAGAGGAAAATGGGAAGCAGACGATCTTGCAGCTTGGAAGGGTAGGCAAATCCAAGTTTGTGATGGATTTCAGGTATCCACTGAAT GGCTACCAAGCGTTCTGCATATGCTTGACTTCAATTGATTCAAAACTATGCTGTGCTGTTTGA
AA sequence Show only first row Show all	>Lus10041617 pacid=23147008 polypeptide=Lus10041617 locus=Lus10041617.g ID=Lus10041617.BGIv1.0 annot-version=v1.0 MAKLDRPTNNIRPNHHHHSCSDGDVLAAARAFTADNKENICCINGDKDNKENVNISVIGNSNSNAKPLSLSCTNGPVVVSSGMQQKKKSLSTGRVVLKAS SLQLCMQMNEPDRAFMPKIWDSSCFPPAAESEEQHSSSLNIWDYSDSEAAPASSWSTLPNRALLCRPLPLDVEKCTCVIVKESSPDGLDGGTLYSLYTNE GHGRQDRKLAMAYQRRNGGRSEFIVAQKLKGLLSCSDDSFVGNVTANLIGSKYHIWNQNQIQVPNSSGKQGGNPLLGVVTFVPTIGTWTGSYRKMKAYIP KHESMLLKNNTQVQHINGLPKDWEERMNKVYKLHSRIPHYNTVIKQHELDFRDGGKAGPKIQSSVKNFQLTLEENGKQTILQLGRVGKSKFVMDFRYPLN GYQAFCICLTSIDSKLCCAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	0	1
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	2.0	0.9653
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	2.4	0.9636
AT4G02800			unknown protein		Lus10014668 [exp]	3.3	0.9718
AT2G37960			unknown protein		Lus10021116 [exp]	3.9	0.9652
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	4.2	0.9657
AT4G02800			unknown protein		Lus10000658 [exp]	4.9	0.9661
AT5G01910			unknown protein		Lus10014179 [exp]	5.5	0.9596
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	6.0	0.9571
AT4G15830			ARM repeat superfamily protein...		Lus10043416 [exp]	6.3	0.9612
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	6.5	0.9620

Compare expression of checked genes

Lus10041617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.