Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79710 614 / 0 Major facilitator superfamily protein (.1) AT5G25050 553 / 0 Major facilitator superfamily protein (.1) AT5G25040 488 / 1e-169 Major facilitator superfamily protein (.1.2.3) AT5G10820 382 / 2e-128 Major facilitator superfamily protein (.1) AT2G32040 182 / 3e-51 Major facilitator superfamily protein (.1) AT5G54860 167 / 6e-46 Major facilitator superfamily protein (.1) AT1G04570 100 / 1e-22 Major facilitator superfamily protein (.1) AT2G33280 86 / 5e-18 Major facilitator superfamily protein (.1) AT1G64890 84 / 3e-17 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024099 [exp] 895 / 0 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 581 / 0 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 580 / 0 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 405 / 1e-136 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 192 / 2e-54 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 185 / 8e-52 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 108 / 4e-25 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10024977 [exp] 94 / 2e-20 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10023708 [exp] 84 / 7e-17 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041600 [exp] 688 / 0 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 616 / 0 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 612 / 0 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 451 / 3e-155 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 446 / 8e-152 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 193 / 5e-55 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 120 / 2e-29 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 120 / 4e-29 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 117 / 3e-28 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 106 / 1e-24 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10041620 pacid=23146628 polypeptide=Lus10041620 locus=Lus10041620.g ID=Lus10041620.BGIv1.0 annot-version=v1.0 ATGGAAGAAACCCACTTCGAGAGGAAGGGATTGGTTAAGGGCTTGGTGATGAGGCCGATACATTGGTTCAGAATGTTGAGTGATGAGCTGCACTGGAGCC TTGTGATGGGTGTTGTAGTTGTTTATGGAATCAGTCAGGGTTTCGGAGTTGGGCTTGTCCGAGTTAGTACGCAGTACTACATGAAGGACGATCAGAAGCT GCAACCCTCTGAAGCTCAGCTCTTTTTCGGCCTCCTTCAGCTCCCTTGGATTGTCAAGCCCTTGTGGGGCTTATTGACTGATACCCTCCCTATTCTTGGC TATAGGAGGCGCCCCTATTTCATCTTTGCAGGGTTTCTTACTGCTACCTCAATGCTGGTGGTATCACTGCAACCAAACTTGTCGCTTGCATTCGCCATGC TTTCTCTCATGTCAGGAAGTACTGGGATGGCTATATCAGATGTTACCATTGATGCATGTGTAACACAGAGCATTGGAAACCACCCATATCTTGCTGGCGA TATGCAAAGCTTATGTGGGATCTGCTCCTCCATTGGATCCTTGGTTGGCTTCTCTCTCAGTGGCTTTCTTGTCCACCTCGTCGGACCTAAGGGTGTGTTC GGATTTCTGAGTTTTCCAGCAGGCCTGGTCATCATGGTTGGTGTGATGCTACGAGAAAGCAATGCACAGCGATTTGTGTACAGAGGGGTACACGAGAAGT TCCAAGATGCTGGTAAAGCAATGTGGAGAACGCTAAAATGTCGCGAAGTGTGGAGGCCATGTTTATTTATGTTCTTGTCCATTTGTGTCAGCTTACACAT TCATGAAGGGATGTTCTATTGGTACACTGATGCAGAGGACGGTCCATCTTTCTCGCAGGAGGTTGTAGGGTCCATATTCTCTTTTGGCGCAATTGGCTCT CTCTCTGGAGTCCTCTTGTACCAAAATTTTCTGAAGAACCATCCTCTACGGGACATAGTTTTTTGGTCTCAGCTACTGTTTAGCATATCAGGATTACTGG ATTTGATGTTGGTCCTGCGTATCAACTTGAAAATTGGTTTGCCCGATTATTTCTTTGTTGTCATTGACGAAGCTGTTACTCGGATGATTGGACGTGTTAA GTGGATGCCTCTCCTCGTACTGAGCTCCAAGCTTTGCCCTCCTGGTATAGAGGGCACCTTTTTTGCCCTGCTGATGTCAATCGACCATATAGGTCTGCTC ATTGCCACTTGGCTTGGAGGTCTGGTATTGCATATGTTGAATGTCACAAGGACACAATTCGACAACCTTTGGTTTGCACTTTTGATCCGAAGCATGATGA GGCTGCTTCCACTGGCCCTTCTTTTCCTCATCCCGAGGAGTGATCCGAACTTGTCTGTTCTTCCAGCAGAGATGTTGAAGATGAAAAAGGGTGACGACGA TACACCTGAAAACCAGAAGCTTGAGATGGCCTCCCTTATCGACAGCACTTGA
AA sequence Show only first row Show all	>Lus10041620 pacid=23146628 polypeptide=Lus10041620 locus=Lus10041620.g ID=Lus10041620.BGIv1.0 annot-version=v1.0 MEETHFERKGLVKGLVMRPIHWFRMLSDELHWSLVMGVVVVYGISQGFGVGLVRVSTQYYMKDDQKLQPSEAQLFFGLLQLPWIVKPLWGLLTDTLPILG YRRRPYFIFAGFLTATSMLVVSLQPNLSLAFAMLSLMSGSTGMAISDVTIDACVTQSIGNHPYLAGDMQSLCGICSSIGSLVGFSLSGFLVHLVGPKGVF GFLSFPAGLVIMVGVMLRESNAQRFVYRGVHEKFQDAGKAMWRTLKCREVWRPCLFMFLSICVSLHIHEGMFYWYTDAEDGPSFSQEVVGSIFSFGAIGS LSGVLLYQNFLKNHPLRDIVFWSQLLFSISGLLDLMLVLRINLKIGLPDYFFVVIDEAVTRMIGRVKWMPLLVLSSKLCPPGIEGTFFALLMSIDHIGLL IATWLGGLVLHMLNVTRTQFDNLWFALLIRSMMRLLPLALLFLIPRSDPNLSVLPAEMLKMKKGDDDTPENQKLEMASLIDST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79710			Major facilitator superfamily ...		Lus10041620 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	2.6	0.7850
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	6.0	0.7197
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	14.4	0.6871
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10033610 [exp]	15.8	0.7001
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10026730 [exp]	15.9	0.7267
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10003769 [exp]	20.9	0.6547
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	21.2	0.6951
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10007863 [exp]	28.9	0.7056
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	35.6	0.6899
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	37.9	0.6996

Compare expression of checked genes

Lus10041620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.