Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79720 478 / 7e-166 Eukaryotic aspartyl protease family protein (.1) AT5G10770 262 / 6e-82 Eukaryotic aspartyl protease family protein (.1) AT3G61820 209 / 1e-61 Eukaryotic aspartyl protease family protein (.1) AT5G10760 209 / 1e-61 Eukaryotic aspartyl protease family protein (.1) AT3G20015 207 / 4e-61 Eukaryotic aspartyl protease family protein (.1) AT1G01300 205 / 3e-60 Eukaryotic aspartyl protease family protein (.1) AT1G25510 198 / 2e-57 Eukaryotic aspartyl protease family protein (.1) AT2G42980 171 / 6e-47 Eukaryotic aspartyl protease family protein (.1) AT3G18490 169 / 1e-46 Eukaryotic aspartyl protease family protein (.1) AT3G59080 160 / 4e-43 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024098 [exp] 655 / 0 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 265 / 7e-83 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 233 / 5e-70 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 202 / 6e-59 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 172 / 7e-48 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 168 / 2e-46 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 166 / 5e-46 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 169 / 2e-45 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10038732 [exp] 163 / 7e-45 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041700 [exp] 526 / 0 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 513 / 7e-180 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 245 / 2e-75 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 242 / 3e-74 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 232 / 2e-70 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 229 / 3e-69 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 229 / 3e-69 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 218 / 6e-65 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 214 / 2e-63 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 214 / 3e-63 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10041621 pacid=23146923 polypeptide=Lus10041621 locus=Lus10041621.g ID=Lus10041621.BGIv1.0 annot-version=v1.0 ATGGTGGAAACAAAGATGCTATCTTTTCCCACTGTTATCATGAAGCTGCTCTTGTTGTTTTCCCTTCTCTGTTATCATCAAGTTGCTGTAGGGAAGAGAG TTCCTCTAGCTAACCTGTTGGAAGAACACAACCTATGGAAGCAGCTATTGATGAGCAAGAGCTTGAATCATTCTTCAAGCTCATCATGTCTTTCCCACAA ATCAAGACATACAGAGGGGGCAACCATTCTGGAAATGAGGCACAAGGATGTGTGCTCATCATCAGCCACAATTCAGGACTGGACCAAGAAGCAACACAAT ACCCTTATTCTTGACAATGTCCGGGTTCACTCTATTCAGTCTAGAATGCAAAGTACCACCCTTGTCAACCAAGATGCCAGCAGCAAGTTTACTGGAACAA CTCAAATCCCATTGGCATCAGGAATACGACTTGAAACATTGAACTACATAGTCACTGTACAGCTTGGAGGGAAGCCACTGACAGTAATAATAGACACTGG AAGTGACTTGACTTGGGTTCAATGCCAGCCCTGCAGGCTTTGTTACAACCAAAAAGATCCTCTCTTTGACCCTTCCATCTCTCCATCTTTCCAGAGGCTG CCTTGCAATTCATCAGCCTGTAAGTCCCTCGATTTCGCAACTGGCAACTCCGGTGTCTGTGGCAGTAGCTACCCACAAAGTTGTAACTATTTTGTAAGCT ATGGCGACGGGTCCTACACAAGAGGTGATCTAGCCTCTGAAGAGCTTAACTTGGGAGGTGTTCCAGTTAGTAGTTTCATATTTGGGTGTGGAAGGAACAA TAAAGGTTTGTTTGGAGGAGCTTCAGGTTTGATGGGGTTGGGTAGGAGTAGCCTTTCATTGGTTTCTCAATCTGAATCCATCTATGGAGGTGTTTTCTCC TACTGTTTGCCCACAACAGCACCTGATGCTTCTGGTTCATTAGCATTTGGAGCCAATACCACAGTTTACAATAATTTCACTCCCATTTCTTACACCAGAA TGATCCCTAATCCTCAGCTCCCAACCTTCTACTTTCTCAATCTTACCGGGATGACCATAGGTGGGAAGTATCTCCCTAATTTTGGCAGTGGGATTCTGAT TGATTCCGGAACAGTCATATCAAGGCTCCCCCCTTCACTCTACAATGCTGTAAAAGACGAGTTTTTGAGACAATTCGTCGGGGTTCCCTCTGCACCGAGT TTTTCGATCCTGGACACTTGCTTCAATCTGACAGGGTACCAGGAGATTGATGTTCCAACCATTAGCATGAACTTCGAATGGAATGTGGCACTGGAAGTGG ACCTAAGTGGAGTCTTCTATTTCGCCAAGGCTGATGCATCTCAGGTATGTCTCGCCATCGCGAGCCTTGCTTATGAAGGTGAGATTGGCATAGTGGGGAA CTATCAGCAGAGGAACCAGAGGGTTGTCTATGATACCAGAAACTCAATGGTGGGATTTGCAGCAGAAACTTGCAGTTTCAGCTAA
AA sequence Show only first row Show all	>Lus10041621 pacid=23146923 polypeptide=Lus10041621 locus=Lus10041621.g ID=Lus10041621.BGIv1.0 annot-version=v1.0 MVETKMLSFPTVIMKLLLLFSLLCYHQVAVGKRVPLANLLEEHNLWKQLLMSKSLNHSSSSSCLSHKSRHTEGATILEMRHKDVCSSSATIQDWTKKQHN TLILDNVRVHSIQSRMQSTTLVNQDASSKFTGTTQIPLASGIRLETLNYIVTVQLGGKPLTVIIDTGSDLTWVQCQPCRLCYNQKDPLFDPSISPSFQRL PCNSSACKSLDFATGNSGVCGSSYPQSCNYFVSYGDGSYTRGDLASEELNLGGVPVSSFIFGCGRNNKGLFGGASGLMGLGRSSLSLVSQSESIYGGVFS YCLPTTAPDASGSLAFGANTTVYNNFTPISYTRMIPNPQLPTFYFLNLTGMTIGGKYLPNFGSGILIDSGTVISRLPPSLYNAVKDEFLRQFVGVPSAPS FSILDTCFNLTGYQEIDVPTISMNFEWNVALEVDLSGVFYFAKADASQVCLAIASLAYEGEIGIVGNYQQRNQRVVYDTRNSMVGFAAETCSFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	0	1
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10026769 [exp]	4.5	0.8182
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	5.5	0.8225
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	6.5	0.8140
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	6.6	0.8245
AT4G34770			SAUR-like auxin-responsive pro...		Lus10025909 [exp]	8.5	0.8205
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	8.5	0.8115
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Lus10008822 [exp]	9.5	0.8013
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	11.5	0.8203
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	12.4	0.7891
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	13.7	0.7865

Compare expression of checked genes

Lus10041621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.