Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 344 / 4e-114 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 302 / 2e-96 unknown protein AT3G05770 117 / 1e-28 unknown protein AT1G54300 107 / 8e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024097 [exp] 866 / 0 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10036602 [exp] 370 / 1e-122 AT4G30780 511 / 5e-176 unknown protein Lus10035819 [exp] 369 / 4e-122 AT4G30780 514 / 3e-177 unknown protein Lus10010920 [exp] 157 / 2e-43 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10029847 [exp] 144 / 2e-36 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10029846 [exp] 137 / 6e-35 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10020694 [exp] 128 / 6e-32 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10007704 [exp] 66 / 7e-13 AT4G30780 74 / 1e-16 unknown protein Lus10024256 [exp] 59 / 1e-09 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185050 [exp] 461 / 2e-159 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.001G041800 [exp] 441 / 3e-151 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.018G102800 [exp] 398 / 1e-133 AT4G30780 501 / 1e-172 unknown protein Potri.006G180500 [exp] 384 / 2e-128 AT4G30780 503 / 2e-173 unknown protein Potri.013G009000 [exp] 187 / 3e-53 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 165 / 4e-45 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041622 pacid=23147083 polypeptide=Lus10041622 locus=Lus10041622.g ID=Lus10041622.BGIv1.0 annot-version=v1.0 ATGGTTCAGATGGTCAGCTCTTCCCCTGGACTGAAACTAGAGGCGGAAGCCACCGCCGGCGGGAGCTCCTCCTCAATGGTCGGTCGTCTCCAGTTTGGCC GACTTAACAAACGTGCAAAGCTCGACTCTTCTATTCAACTGCAGGCACGGCATGAGCCACTTGAAGAACCTAGCCCTTTGGGTCTACGGCTGAAAAAGAC TCCATCTTTCTTAGATTTAGTTCAATCTAAGCTCTCTCACGGAGGGAAGAAGGATCATAATAATAATAAGAATTCTGCTGACGGCAACAAGCTCAAAGCT TCCAACTTTCCCGCTTCACTCCTCAGAATTGGGGATTGGGAGTACAAATCCAGGTACGAAGGGGATTTGGTAGGCAAATGTTATTTTGCAAAGCATAAGC TGGTGTGGGAAGTTCTGGATGGTGGGCTTAAGAACAAGATTGAAATCCAGTGGTCTGATATTGTGGCTATTAAGGGCGATTTCTCTGAAGATGATGATCA ACCTGAGACCTTGAATGTTGTGTTATCTAGACCGCCGCTCTTCTTTAGGGAGACGAATCCTCAACCAAGGAAGCACACTTTGTGGCAGGCCTCCACAGAT TTCACTGGTGGGCAAGCCAGCATAAACAAGCAACATTATCTGGAATGCCAACATGGCTTCTTACGGAAGCACTTTGAGAAACTCGTACAGTGCGATCCTC GTCTCAACATCCTTAGTCAAAGACGTGAGAAGATTTCTTTGGCATCCCCATATTTCGAACACAGAACTCCTGCATTTGAGGACTTGAATGAACCTAGTGA TGCTATGGATGTGAAGTCGGAGGAAGGACCTTCTGTCTTTGCAATGCACGATGTGCCATCGACTTCTCAAAAGAGTCCTTCAACTATCACAGGTATCGAT ACGATCGAAGGAGTCAAAGTCAACAGCTTGAAAAGAAACGAAGGGAACATTCCAGGCCATTGGCGTCGAACTAATCCACAGAGAGTTCAACCATCCATGT CAATTGATGACCTTGTGAACTACATTGGACACTGCACTTCAGAGCTTAAGGGCGACAACAGCATTCTGGAAGAGATTACTCAGCACTTGCTAAGTGATTC TCAGTTTACCTCAGACGAGGAGTCCATCATGTCGAGGGTCAATTCTTTCTGCTGCCTGCTGCAGAAAGATCCAGGAGCTGCACGGAATCTCCTTGCGAGA AGCCAGAGCGATATCGAGACTGGCAGCAGTGGATGGACAGCTAGAAGTAACGAACCAACTCCACTACAACCATCATCGCAGATGAAGTCTGGAGAATCAT TTCCTATATCCGAAAGTCAGGAGCACAAAAATGTCCTTCGCCACAATGCTGCTCCTCTAATGTCCAGGAATAATTCTGGTGGAGAGCTGCTTAACCTTCC GAGGATCGCCTCTCTGCCACGGTTCCTGCCGAACATGTAA
AA sequence Show only first row Show all	>Lus10041622 pacid=23147083 polypeptide=Lus10041622 locus=Lus10041622.g ID=Lus10041622.BGIv1.0 annot-version=v1.0 MVQMVSSSPGLKLEAEATAGGSSSSMVGRLQFGRLNKRAKLDSSIQLQARHEPLEEPSPLGLRLKKTPSFLDLVQSKLSHGGKKDHNNNKNSADGNKLKA SNFPASLLRIGDWEYKSRYEGDLVGKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVAIKGDFSEDDDQPETLNVVLSRPPLFFRETNPQPRKHTLWQASTD FTGGQASINKQHYLECQHGFLRKHFEKLVQCDPRLNILSQRREKISLASPYFEHRTPAFEDLNEPSDAMDVKSEEGPSVFAMHDVPSTSQKSPSTITGID TIEGVKVNSLKRNEGNIPGHWRRTNPQRVQPSMSIDDLVNYIGHCTSELKGDNSILEEITQHLLSDSQFTSDEESIMSRVNSFCCLLQKDPGAARNLLAR SQSDIETGSSGWTARSNEPTPLQPSSQMKSGESFPISESQEHKNVLRHNAAPLMSRNNSGGELLNLPRIASLPRFLPNM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10041622 [exp]	0	1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	1.4	0.9544
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	4.0	0.9330
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	4.9	0.9290
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	8.9	0.8729
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	10.4	0.9017
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	11.3	0.9120
AT2G36630			Sulfite exporter TauE/SafE fam...		Lus10020733 [exp]	13.3	0.8966
					Lus10037130 [exp]	15.5	0.8855
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	15.5	0.9222
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	18.0	0.9146

Compare expression of checked genes

Lus10041622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.