Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23300 642 / 0 PYRD pyrimidine d (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024096 [exp] 718 / 0 AT5G23300 672 / 0.0 pyrimidine d (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089700 [exp] 659 / 0 AT5G23300 751 / 0.0 pyrimidine d (.1) Potri.007G074201 [exp] 331 / 2e-112 AT5G23300 411 / 3e-144 pyrimidine d (.1) Potri.007G074101 [exp] 281 / 1e-93 AT5G23300 282 / 1e-94 pyrimidine d (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01180 [flax] [poplar] DHO_dh Dihydroorotate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041623 pacid=23146965 polypeptide=Lus10041623 locus=Lus10041623.g ID=Lus10041623.BGIv1.0 annot-version=v1.0 ATGGCGGCAATGCATCTTAAGAGATTACTCGGAGGGGTTTTGCATAAAACGGCCGTCTATGCTCACCCTGCAGCTGCTCGACGAGGAATCGGAAGTGCAG CAGCCGAATTCAGACGCTTTTCTTCTTCAACAGCTTCAAAAACCGCTTCGAAAATTCCTCACTTGCCCAAAAAGGGAAGGTTGTTATCAGGGGGATTTAT TGGACTGGTCATAGCTGGAGGAGCTTATGTTAGTACAGTTGATGAAGCTACTTTCTGTGGCTGGCTGTTTGACGCAACAAAACTTGTGAATCCATTTTTC GCCCTGCTTGATCCTGAGACTGCTCATAGACTAGCTGTGTCTGCTGCTGCTCGGGGTTGGGTTCCGAGGGAGAAGAGACCTGATGCACCAATTTTGGAAC TGGAAGTATGGGGAAGGAAGTTCTCTAACCCTGTAGGTCTTGCTGCTGGATTCGATAAAAATGCTGAGGCTGTTGAAGGCTTACTTGCTGTGGGGTTTGG CTTCATTGAGGTTGGCTCTGTCACCCCAGTACCGCAACAAGGAAATCCAAAGCCTCGTATCTTTAGGTTGCGTGAAGAAAGTGAAGGCATTGTAGCTGTT GCTAAGCGATTGGGCGCTCAACATGGAAAAAGGAAGTTGGCTGAAACTTCAAGCACGTCAGCTCCATCTTCTGATGATGTCAAACAGGGTGGGAAAGCTG GACCCGGAATTCTGGGGGTTAATCTTGGAAAGAACAAAGCAAGTGAAGATGCTGCTTCGGATTATGTCCAAGGCGTTATTAATGTTTCATCGCCGAATAC CCCTGGCCTGCGTACCCTTCAGGGTAGAAAACAGTTGAAGGACCTTGTTAAGAAGATTCAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAGGGTCCA CCTCCCTTGCTGGTCAAAATTGCACCTGACTTGTCTAAAGAAGACCTGGAAGATATTGCAGCGGTTGCTCTTGCTCTTCGTTTGGATGGACTGATCATCT CAAATACAACAATACAAAGACCTGACACCGTTAAGCAAAACCCAGTGGCTGAGGAAACTGGTGGTCTAAGTGGAAAGCCTCTTTTTGATCTCTCTACGAA TATTTTGAAGGAGATGTATATGTTAACAAGGGCTGCGGAGGTATTAGCAGGTGAGCGTCCATGGGTCTATTTTTCCTTTCTCCTAAGTGGTGAGGATGCA TACAAGAAAATAAGAGCTGGAGCAACTCTTGTACAGCTTTATACAGCGTTTGCTTATGGTGGACCCGCATTAATTCCTCGAATAAAGGTTGAATTAGCAG AATGCTTGGAACGAGACGGGTTCAAGTCAGTCATCGAGGCTGTTGGTGCAGATCACAGATGA
AA sequence Show only first row Show all	>Lus10041623 pacid=23146965 polypeptide=Lus10041623 locus=Lus10041623.g ID=Lus10041623.BGIv1.0 annot-version=v1.0 MAAMHLKRLLGGVLHKTAVYAHPAAARRGIGSAAAEFRRFSSSTASKTASKIPHLPKKGRLLSGGFIGLVIAGGAYVSTVDEATFCGWLFDATKLVNPFF ALLDPETAHRLAVSAAARGWVPREKRPDAPILELEVWGRKFSNPVGLAAGFDKNAEAVEGLLAVGFGFIEVGSVTPVPQQGNPKPRIFRLREESEGIVAV AKRLGAQHGKRKLAETSSTSAPSSDDVKQGGKAGPGILGVNLGKNKASEDAASDYVQGVINVSSPNTPGLRTLQGRKQLKDLVKKIQAARDEMQWGEEGP PPLLVKIAPDLSKEDLEDIAAVALALRLDGLIISNTTIQRPDTVKQNPVAEETGGLSGKPLFDLSTNILKEMYMLTRAAEVLAGERPWVYFSFLLSGEDA YKKIRAGATLVQLYTAFAYGGPALIPRIKVELAECLERDGFKSVIEAVGADHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23300		PYRD	pyrimidine d (.1)		Lus10041623 [exp]	0	1
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	7.2	0.7834
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	9.5	0.7973
					Lus10019215 [exp]	19.2	0.7767
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	28.0	0.7785
AT5G40520			unknown protein		Lus10025568 [exp]	33.5	0.7571
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	35.9	0.7807
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	39.0	0.7687
AT5G66631			Tetratricopeptide repeat (TPR)...		Lus10016792 [exp]	44.6	0.7721
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10008825 [exp]	48.5	0.6824
AT3G49990			unknown protein		Lus10015447 [exp]	50.0	0.7534

Compare expression of checked genes

Lus10041623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.