Plant FIBer expression Database

Lus10041624 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80940 202 / 1e-65 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024095
[exp]
345 / 2e-120 AT1G80940 226 / 6e-74 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G041900
[exp]
230 / 2e-76 AT1G80940 250 / 1e-84 unknown protein
Potri.003G184925
[exp]
219 / 3e-72 AT1G80940 253 / 1e-85 unknown protein
PFAM info
Representative CDS sequence
>Lus10041624 pacid=23146644 polypeptide=Lus10041624 locus=Lus10041624.g ID=Lus10041624.BGIv1.0 annot-version=v1.0
ATGAGTGGTATAGTTAGGATTGAGGAGAAGAAGATGGTTGAGGGAGGAGATCGAGGAGGAGGAGGAAGTTCTGTTGGTGCTTTGAATGGGTTCGCTCCTG
CAACTTCCACCAGGATCTTTTGGAATTCTAGGAAAAGATCAGCTGGTGGTGGAAGGAGCTTTAACGACAAGTTAATGGACGAAACCACCAGCAGTGGCAC
TCCTCCTCCCAAAACTCAAGATGATGAAAAGATGCAGGAAGCAACCGAAACAGAAACTGAAATCGAAACCGAAATCCCACAGCTGTCCGAGCGACGAAAG
GCTCTCTTCGAACCCCTGGAACTCAACCTCAACGGCAAACGGCCATCTGCTGAGTCACTGCTCCCACCACCAGACTTCGATACCGCCAGCTACCCGAAAG
GGTGGCTGATCGGTAAGAAGCGAAAGCTTGTGAATGTGGATGTTGTGGAGAGCATGCGCAGGATAGCTGTCCAGGAAATGAACAGAAAGGACCGTGAAAT
CGATGGGCTTAACGAGCAGTTGGAAGAGGATTCGCGTGTTCTGGAGCACCTGCAGCTACAGGTTCTGGAAGAGAAAAGTAAAAGGGGAGAGGTAGAGAGG
GAGAACAGGATGCTACATGAACAGATAAACATGCTGATGAACATGCTTCAGGAAAATGAGGAGGAGGTGGAAGAAGAAGAAGAAGAAGAAGAAGCCCCCA
AAGATCACTGA
AA sequence
>Lus10041624 pacid=23146644 polypeptide=Lus10041624 locus=Lus10041624.g ID=Lus10041624.BGIv1.0 annot-version=v1.0
MSGIVRIEEKKMVEGGDRGGGGSSVGALNGFAPATSTRIFWNSRKRSAGGGRSFNDKLMDETTSSGTPPPKTQDDEKMQEATETETEIETEIPQLSERRK
ALFEPLELNLNGKRPSAESLLPPPDFDTASYPKGWLIGKKRKLVNVDVVESMRRIAVQEMNRKDREIDGLNEQLEEDSRVLEHLQLQVLEEKSKRGEVER
ENRMLHEQINMLMNMLQENEEEVEEEEEEEEAPKDH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80940 unknown protein Lus10041624
[exp]
0 1
AT1G80940 unknown protein Lus10024095
[exp]
1.0 0.9000
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Lus10005934
[exp]
3.2 0.8567
AT4G36980 unknown protein Lus10019346
[exp]
3.5 0.8502
AT5G08710 RUG1 RCC1/UVR8/GEF-like 1, Regulato... Lus10035957
[exp]
3.9 0.8435
AT4G38810 Calcium-binding EF-hand family... Lus10012178
[exp]
4.2 0.8433
AT4G38810 Calcium-binding EF-hand family... Lus10007567
[exp]
6.5 0.8297
Lus10001257
[exp]
7.5 0.8270
AT1G75380 ATBBD1 bifunctional nuclease in basal... Lus10024277
[exp]
9.0 0.8541
AT2G28930 APK1B protein kinase 1B (.1.2.3) Lus10005462
[exp]
9.0 0.8265
AT2G22420 Peroxidase superfamily protein... Lus10025737
[exp]
9.8 0.8154

Lus10041624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.