Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16080 450 / 1e-160 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024094 [exp] 462 / 2e-165 AT1G16080 343 / 1e-118 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G040100 [exp] 486 / 2e-174 AT1G16080 466 / 2e-166 unknown protein Potri.003G185754 [exp] 483 / 9e-174 AT1G16080 423 / 5e-150 unknown protein Potri.003G185501 [exp] 480 / 2e-172 AT1G16080 422 / 2e-149 unknown protein Potri.003G185901 [exp] 468 / 4e-168 AT1G16080 417 / 4e-148 unknown protein Potri.001G041140 [exp] 463 / 1e-165 AT1G16080 427 / 2e-151 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041625 pacid=23146841 polypeptide=Lus10041625 locus=Lus10041625.g ID=Lus10041625.BGIv1.0 annot-version=v1.0 ATGGCAGCACTAACTCTTGCTTCTTCTCTTACTAATTCATCTCTTTTGCAACCCTCTTCTAACCTAACCCGCTTTGCCTCTCGTCGAACCTTTTCCAAAG CGCGTTACACAACCCCAAACATTTCCGCTATGGCCGCAGCTCCATCCACCATATCTTCTGCTACCAAGGTGGTACCAGCGCTGATTGTCGGCGGGGGACG TGTCGGGAGAGCCTTACAAGACATGGGTACGGGTCAGGATTACATGGTCAAGAGAGGGGATCCAGTTCCTGCTGATTTCCAAGGCCCCATTTTGGTCTGC ACCAGGAACGATGACCTGGACGCTGTTCTCCAAGCTACCCCTAAATCAAGATGGAGCGATTTGGTGTTTTTCCAGAATGGGATGCTAGAGCCATGGTTTC ACAGCAAAGGACTGGGTGATGCTGGCCAAGTTTTGGCCTACTTTGCAGTTTCCAAGCTTGGAGAACCCCCCACCGATGGCAAAACTGACACCAACCCTGA GGGATTGACCGCTGCTTTTGGCAAATGGGCGCCTGCCATTGCTGCAAGATTGGTTTCCGGTGGCCTATCTTGCAAGGTCCTTGAGAAAGAAGCATTTGAG AAGCAAATGTTGGAGAAGTTGATTTGGATATCAGCATTCATGCTGGTTGGAGCTCGCCATCCAGGAGCAACTGTTGGTGCTGTGGAGAAGGATTTCCGTT CCGAGGTGTCCAGCCTCATCAAAGAACTTGCCTCTGCGGCAGCTGCTGAGAAAGGCATTGTGTTCGATGACAGTATTGAGGAAAGCCTATGTGCTTATTC GAGGGCTGTTGCAAACTTTCCAACAGCAGTTAAAGAGTTCAAATGGAGGAATGGCTGGTTTTATTCCCTCTCCGAGAAAGCAATAGCTGAAGGAAAACCC GATCCGTGCCCCTTGCATACTACATGGCTTAAGGAGATAAAAGTCATCTGA
AA sequence Show only first row Show all	>Lus10041625 pacid=23146841 polypeptide=Lus10041625 locus=Lus10041625.g ID=Lus10041625.BGIv1.0 annot-version=v1.0 MAALTLASSLTNSSLLQPSSNLTRFASRRTFSKARYTTPNISAMAAAPSTISSATKVVPALIVGGGRVGRALQDMGTGQDYMVKRGDPVPADFQGPILVC TRNDDLDAVLQATPKSRWSDLVFFQNGMLEPWFHSKGLGDAGQVLAYFAVSKLGEPPTDGKTDTNPEGLTAAFGKWAPAIAARLVSGGLSCKVLEKEAFE KQMLEKLIWISAFMLVGARHPGATVGAVEKDFRSEVSSLIKELASAAAAEKGIVFDDSIEESLCAYSRAVANFPTAVKEFKWRNGWFYSLSEKAIAEGKP DPCPLHTTWLKEIKVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16080			unknown protein		Lus10041625 [exp]	0	1
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	1.0	0.9504
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	2.8	0.9310
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	4.2	0.9341
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10009609 [exp]	5.9	0.9295
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	7.9	0.9341
AT4G00030			Plastid-lipid associated prote...		Lus10020912 [exp]	8.1	0.9196
AT2G44870			unknown protein		Lus10009575 [exp]	9.3	0.8890
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10038881 [exp]	9.7	0.8621
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10023605 [exp]	11.2	0.8998
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	11.3	0.9234

Compare expression of checked genes

Lus10041625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.