Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79690 490 / 5e-166 ATNUDT3 nudix hydrolase homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024090 [exp] 716 / 0 AT1G79690 885 / 0.0 nudix hydrolase homolog 3 (.1) Lus10026103 [exp] 531 / 0 AT1G79690 1136 / 0.0 nudix hydrolase homolog 3 (.1) Lus10002329 [exp] 509 / 2e-175 AT1G79690 800 / 0.0 nudix hydrolase homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185951 [exp] 439 / 5e-146 AT1G79690 1218 / 0.0 nudix hydrolase homolog 3 (.1) Potri.003G185776 [exp] 438 / 8e-146 AT1G79690 1214 / 0.0 nudix hydrolase homolog 3 (.1) Potri.003G185600 [exp] 437 / 4e-145 AT1G79690 1216 / 0.0 nudix hydrolase homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF03571 [flax] [poplar] Peptidase_M49 Peptidase family M49
Representative CDS sequence Show only first row Show all	>Lus10041626 pacid=23147058 polypeptide=Lus10041626 locus=Lus10041626.g ID=Lus10041626.BGIv1.0 annot-version=v1.0 ATGAGAGATGGACGTCATCTTTTTCAGGCCAATGCTAGCTCTCTTGCTAAGCAGGCCAAACGTTCTTCTCAAGCGAAAGGCGATGTGAAAACCTCTGAAA ACTCTGGAGCAAAACCATACGGGTGGACTAAAAGGTACCAAGAGGATGATGCTGGCAATCGCTCCTCGACCCTACAACGCCAACTCCAACGCTACGCTCC TGTCTCCCTCACTGCTGAGTTGTCAGGACTATCAGATGGAGACAAAGAGGCCCTGGGTTTCATAATCAAGGCTGCAAAATGTATTGATGAGATATTCTAC CATCAGGTATTGGAGACCAATCCGGTTCTTAGAGATTGGCTTCAGAAGCATGCAGAGGGAGCCACTGTATCTGGACTCGATAAGCTCACATGGTCCAGTC TTGATGAGAACGAGCCGTTCCTGACAACCAAAGACTCGGCAATAAGGTTGGTTCCTGAAGCCACAAAGGCGGTAAGAGGATGGAAAGGTCTGGAGAATTT GAGTCATGGAAAAGCATCCTCTCGTAATCGCAGCAGAAAGAGGCCACAGGTTTCTTCACAGTTATCAGGAGGGAGAGTAAAAGTGGTCAACTTTATATTG TTCCATACTCAAAAGAGAAAGGCTGCTGGCCATCTCCACAAAGCTGCAGACTTGGCTACTACTCCGAGGACTCCAAGGTTGATATTAGTAATTGGTCCTT ACAAGACATATGAAGATTCACTCTTCGGATTCAAGGCTACGTTTGAATCTTTCATCGGGGTTCGAGATGATGAGAGGTCTGCTCGTATCAAAATGTTCGG AGAAAACATGCTGAGGTTGGAGCAAAATCTTCCAATGGATGATCAGTACAAATCAACTGAAGTCAAAGTATCACCAATTCGTGTCATTCAACTCATTTGC AATTCTGGGGATGTTGATGGCCCTCAGATCAATGCTTTCAATCTACCAAATCACGAGCGCATAGTCAAAGATCGAGGCACTTCGATGGTGATCATCAAGA ATATCCAAGAAGTAAAGTTTGAGAAAATCCTGAAGCCTATAGCTAATGTCTGCCTCAGCAACGACCAAAAGAACCTCATAGATTTCGATTCCTTCTTTAC ACACATCACCTGCCATGAGTGCATCCATGGCATTGGTTCTCACACCATTACACTTCCAGATGGTTCAACCTCCACTGTCAGACAGGAGCTGCAAGAACTC CACACAGTTCTGGAAGAAGAAAAAGCTGATATAGTTGGCCTTTGGGCATTGAGGTTTTTCATCTCTCAGGGGTTGCTTCCAAAGAGCATGTTGGAGTCTA TGTATGTTTCATTCTTGGCAACGTGCTTCCGAGCAGTTCGGTTCGGGTTGCAGGAGGCTCATGGGTACATGATTGAGTTGTCAGTTACTTTTTCCTTACA ACTTTTGGTTGAAGACGCGGTTGAGAGCCTGAGCAGGGAGATTCTCACGATCCAAGCCAAAGGAGATAAACAGGTTGCAACTGCCCTCCTTCAGAAATAT GGCCAGATGAATCAACCTTTGCAGCTTGGGTTGGACAAATTGGAGAAAATTCAGGTGTCCGTGGATATAGCTCCATCATTTCCTATGGCCGATGGAATCC TCATGCAGAGTGATACTTGA
AA sequence Show only first row Show all	>Lus10041626 pacid=23147058 polypeptide=Lus10041626 locus=Lus10041626.g ID=Lus10041626.BGIv1.0 annot-version=v1.0 MRDGRHLFQANASSLAKQAKRSSQAKGDVKTSENSGAKPYGWTKRYQEDDAGNRSSTLQRQLQRYAPVSLTAELSGLSDGDKEALGFIIKAAKCIDEIFY HQVLETNPVLRDWLQKHAEGATVSGLDKLTWSSLDENEPFLTTKDSAIRLVPEATKAVRGWKGLENLSHGKASSRNRSRKRPQVSSQLSGGRVKVVNFIL FHTQKRKAAGHLHKAADLATTPRTPRLILVIGPYKTYEDSLFGFKATFESFIGVRDDERSARIKMFGENMLRLEQNLPMDDQYKSTEVKVSPIRVIQLIC NSGDVDGPQINAFNLPNHERIVKDRGTSMVIIKNIQEVKFEKILKPIANVCLSNDQKNLIDFDSFFTHITCHECIHGIGSHTITLPDGSTSTVRQELQEL HTVLEEEKADIVGLWALRFFISQGLLPKSMLESMYVSFLATCFRAVRFGLQEAHGYMIELSVTFSLQLLVEDAVESLSREILTIQAKGDKQVATALLQKY GQMNQPLQLGLDKLEKIQVSVDIAPSFPMADGILMQSDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10041626 [exp]	0	1
					Lus10029451 [exp]	1.0	0.9217
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031189 [exp]	5.3	0.8740
					Lus10029825 [exp]	8.7	0.8710
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	9.2	0.8961
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	15.5	0.8904
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	19.6	0.8780
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	21.8	0.8892
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10036877 [exp]	23.1	0.8835
					Lus10038520 [exp]	23.3	0.8912
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	24.5	0.8744

Compare expression of checked genes

Lus10041626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.