Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57330 479 / 7e-172 Galactose mutarotase-like superfamily protein (.1) AT3G61610 413 / 8e-146 Galactose mutarotase-like superfamily protein (.1) AT5G14500 384 / 2e-134 aldose 1-epimerase family protein (.1) AT3G01590 382 / 1e-133 Galactose mutarotase-like superfamily protein (.1.2) AT4G23730 370 / 7e-129 Galactose mutarotase-like superfamily protein (.1) AT4G25900 330 / 5e-113 Galactose mutarotase-like superfamily protein (.1) AT5G66530 132 / 3e-36 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026106 [exp] 568 / 0 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 560 / 0 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 504 / 0 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 491 / 2e-176 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 409 / 4e-144 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 409 / 4e-144 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 391 / 2e-137 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 390 / 4e-137 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 389 / 3e-136 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037700 [exp] 522 / 0 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 519 / 0 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 508 / 0 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 503 / 0 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 414 / 4e-146 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 386 / 3e-135 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 383 / 3e-134 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 135 / 2e-37 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 49 / 3e-06 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10041629 pacid=23146907 polypeptide=Lus10041629 locus=Lus10041629.g ID=Lus10041629.BGIv1.0 annot-version=v1.0 ATGTCGGCCGGAGGTGATACGGAGAGGAAATTCGTGGAATTCTGTAAGGGAGTTAATGGCCTCGATAAGATCATCCTTCGGGAGGTTCGTGGCCAATCTG CTGAGGTTTATCTGAATGGAGGTCAAGTCATATCTTGGAAGAACGAATTTGGAGAAGAGTTGTTATTTCTTAGTAGAAAGGCTGTTTTCAAGCCCCCAGC GGCAATGAGAGGAGGTATCCCAATTAGCTTTCCTCAATTTGGAACTCATGGATCCCTTGAGCAACATGGATTTGCAAGAAACACAGTTTGGACCATCGAT AAAGATCCTCCTCCTTTTGCAACAGTTACTTGCAATAAAGCATTTGTTGATTTAATACTCAAACCATCTGACGACGATCCAAAGAGCTGGCCTCACAGAT ATGAATTCCGGCTAAGGATAACACTGGGCCCAGCCGGAGATCTGATGTTGACCTCCCGTATCCGGAATACAAATACTGATGGGAAACCTTTTACGTTTAC CTTCTCCTACAACACCTATCTCCATGTCACTGATATCAGTGAAGTGCGGATAGAAGGATTAGAGACACTGGATTATCTGGATAACCTTAGGAACCGGGAT CGATTTACTGAACAAGGCGACGCAATAACATTCGAATCAGAAGTTGACAAAGTATATCTGAGCACTCCTACTAAGATAGCTATTTTGGATCATGAGAGGA AGAGAACATATGTATTACGGAAAGATGGACTTCCCGATGCCATTGTTTGGAATCCATGGGATAAAAGAGCAAAGACGATCGTTGATATAGGTGATGCGGA ATACAAGCATATGCTGTTAGTGGGGGCTGCTTGTGTGGAGAATCCTATAACTTTGAAACCTGGGGAAGAATGGAAAGGCAGGCAAGAACTTTCAGCTGTT CCTTCAAGCTACTGCAGCGGACAACTTGATTCAGAGAAGGTGCCTCATACAAGCTAG
AA sequence Show only first row Show all	>Lus10041629 pacid=23146907 polypeptide=Lus10041629 locus=Lus10041629.g ID=Lus10041629.BGIv1.0 annot-version=v1.0 MSAGGDTERKFVEFCKGVNGLDKIILREVRGQSAEVYLNGGQVISWKNEFGEELLFLSRKAVFKPPAAMRGGIPISFPQFGTHGSLEQHGFARNTVWTID KDPPPFATVTCNKAFVDLILKPSDDDPKSWPHRYEFRLRITLGPAGDLMLTSRIRNTNTDGKPFTFTFSYNTYLHVTDISEVRIEGLETLDYLDNLRNRD RFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTYVLRKDGLPDAIVWNPWDKRAKTIVDIGDAEYKHMLLVGAACVENPITLKPGEEWKGRQELSAV PSSYCSGQLDSEKVPHTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	0	1
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	2.8	0.7347
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	4.5	0.6545
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	5.2	0.6862
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	11.8	0.6459
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000404 [exp]	13.6	0.6926
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	14.5	0.6435
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10019257 [exp]	16.1	0.5654
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	17.7	0.6174
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10036961 [exp]	24.7	0.5542
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	28.8	0.6281

Compare expression of checked genes

Lus10041629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.