Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12660 87 / 3e-19 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT4G12730 81 / 1e-16 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G24450 78 / 6e-16 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT5G55730 66 / 1e-11 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G31370 64 / 3e-11 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT3G60900 58 / 6e-09 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G46550 48 / 8e-06 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024089 [exp] 363 / 2e-122 AT3G12660 81 / 4e-17 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10026107 [exp] 193 / 4e-57 AT3G12660 91 / 1e-20 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10000415 [exp] 175 / 8e-53 AT3G12660 91 / 4e-22 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10038004 [exp] 69 / 3e-13 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10016617 [exp] 71 / 6e-13 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10009235 [exp] 71 / 7e-13 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10022517 [exp] 70 / 8e-13 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10006391 [exp] 66 / 2e-11 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 66 / 2e-11 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037800 [exp] 102 / 3e-24 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 90 / 5e-20 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 84 / 6e-18 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.001G367900 [exp] 70 / 9e-13 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.011G093500 [exp] 67 / 9e-12 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G071700 [exp] 64 / 4e-11 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G168100 [exp] 63 / 1e-10 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.014G162900 [exp] 44 / 0.0002 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10041630 pacid=23146886 polypeptide=Lus10041630 locus=Lus10041630.g ID=Lus10041630.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCCTCCATCTACCTGTTCCTCCTCTTCCTCGTCACCTTCATCTCTTCCTCTTCAGCATTCAATGTAACTTCCCTCTTGGGCCCACTTC CCCAGTTCAGCACCTTCTCCAACTACCTCACCCAGGTCGGTCTTGTCTCCGTCATCGCCGACCTTAAAAATGTCACCATCCTCGCCGTCCCTAACTCCAA GATGGCTTCCATCTCCGGCAATTCACGTGACCAGATCAAGCGTATCATGGCCATGCACATCATCCCCGAGTACTACGACCTGGAAACCCTCAATAAGAAA ACACTCCCAAACGGCACCGCATCGCTCCGCACTGTTTACGTCCTCACCGGTTTGGCTAGGGGTAAAGACGGAATTTTACATGTTACTAAGAGGGGGAGAT CTAATTCCCACCGCTTCACCTTCTCCAGCGCGGTTGACCTCCCACGCGCCAAACGAAATAATATTAATCTCATCCAATCCGTCGTCGTTCCGTCTCATAA TATCTCCGTTTTCCACGTCAGCGACTTGATCACTGCCTCTCCTCCTCCTCCTTCAGATGTTGCCGCCGGCAATCAATTAGGCGGCGCTAGGATTTCGAAG TCGAGCAAAGTGGTGCTGAAGAGGGATCAAGAGACGCAGACGACGGAGGAGGGCATCTTCCCCAGGACGTCGTTGGATGTGTTACTGGTACCTACTGAGG ATGCTTCTCCGGCCAAAGCTCCGGAAAAAAGCGGCTCCTCCCCCTCCTCCTCCTCCTCCCCCAAGAAATCCCCTACCAAGGCTCCGTCGTCCCCATCTTC TAACTCCACCTCTAAGGGCAAATCTCCTTCCTCCGGGCCCTCGTCGGACTCTTCAGCTCCGGCACCGACAAAGAAGAAGAGCGGCGGTCCATCACCGGCA GCGACAAAGCCTGCCCCTGCTTCCAATCCGCCCAAGGAACCCAAGGCGAAAGCCTCAGAACCGTCTCCGTCCGAATCATCAGAAAATTCCTCGCCGCCGT CCAAGTCCGGGAACACCTCATCACCGCCGCCTTCCGAATCTCCGGCTAGTGGAACTACAACTTCTGCGCCACCTTCCGGAAACTCTCCAACGAAATCATC TCCTCCAGCACCGGCTTCGGAAACTACGAGTGTGGGGAGTCCATCCGGAGAAGCTCCATCGGCGGAAGCTCCGAAGAGTGGGGCCGATCCGATGATTGGC AACAAAGTTTGGGCCATGGTTACGGTTATGGCTTTGTGGGCCGTGGCCGCATAG
AA sequence Show only first row Show all	>Lus10041630 pacid=23146886 polypeptide=Lus10041630 locus=Lus10041630.g ID=Lus10041630.BGIv1.0 annot-version=v1.0 MASSSSIYLFLLFLVTFISSSSAFNVTSLLGPLPQFSTFSNYLTQVGLVSVIADLKNVTILAVPNSKMASISGNSRDQIKRIMAMHIIPEYYDLETLNKK TLPNGTASLRTVYVLTGLARGKDGILHVTKRGRSNSHRFTFSSAVDLPRAKRNNINLIQSVVVPSHNISVFHVSDLITASPPPPSDVAAGNQLGGARISK SSKVVLKRDQETQTTEEGIFPRTSLDVLLVPTEDASPAKAPEKSGSSPSSSSSPKKSPTKAPSSPSSNSTSKGKSPSSGPSSDSSAPAPTKKKSGGPSPA ATKPAPASNPPKEPKAKASEPSPSESSENSSPPSKSGNTSSPPPSESPASGTTTSAPPSGNSPTKSSPPAPASETTSVGSPSGEAPSAEAPKSGADPMIG NKVWAMVTVMALWAVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10041630 [exp]	0	1
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	4.8	0.8034
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	5.1	0.7816
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	8.5	0.7405
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	12.4	0.7562
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	12.4	0.7370
					Lus10022366 [exp]	12.6	0.7044
					Lus10012543 [exp]	13.4	0.7161
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	13.4	0.7591
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	16.2	0.7614
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	21.8	0.7487

Compare expression of checked genes

Lus10041630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.