Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 174 / 2e-51 ATCXE17 carboxyesterase 17 (.1) AT5G27320 155 / 1e-44 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 146 / 4e-41 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G68620 145 / 7e-41 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 142 / 9e-40 ATCXE18 carboxyesterase 18 (.1) AT5G62180 137 / 6e-38 ATCXE20 carboxyesterase 20 (.1) AT2G45610 134 / 1e-36 alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 133 / 5e-36 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 132 / 9e-36 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 129 / 7e-35 ATCXE13 carboxyesterase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024087 [exp] 604 / 0 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10036168 [exp] 183 / 2e-55 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 180 / 5e-54 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 171 / 1e-50 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 172 / 1e-47 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033548 [exp] 162 / 5e-47 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10015988 [exp] 159 / 3e-46 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017587 [exp] 158 / 2e-45 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10002254 [exp] 148 / 1e-41 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192650 [exp] 430 / 5e-152 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.001G032400 [exp] 430 / 5e-152 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 407 / 5e-143 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 352 / 3e-121 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 190 / 4e-58 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G127600 [exp] 182 / 9e-55 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.017G113700 [exp] 179 / 1e-53 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.016G065000 [exp] 178 / 2e-53 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G101400 [exp] 176 / 3e-52 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.006G198800 [exp] 172 / 2e-51 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10041632 pacid=23146631 polypeptide=Lus10041632 locus=Lus10041632.g ID=Lus10041632.BGIv1.0 annot-version=v1.0 ATGGACAGGGCCCCCGGAGGCCAAGGCTCCGTCGACCGGACATGGACAGGGCCTCCGGAGGCCAAGTTCATGTCCGAACCCGTCCCACCCCACGACCACT TCGTCCACGGTGTTTCCACCCGTGACGTCTCCATCAACCCGAACTCCAGACTCAAGGTCCGCGTCTACCTCCCGGGGCCCCGACCCGATGCCGAATTAAA ACAGAAGCTACCGGTCTTCCTCCACCTCCACGGCGGGGGATTCTGCATCAGCCAACCGGACTGGTTCATGTACTACAACACTTACACCTCCCTCGCCCGA TCCGCTAACGCCGTCGTCGTCTCCGTCTACCTCCGCCTCGCCCCGGAGAACCGCCTTCCCGCCGCCTGCGACGACGGATTCTCCGCCCTCCGATGGCTCG CTTCCTTGTCGGCGGACCAAAGCAACGAGTCATGGCTGACATCCGTAGCCGATTTCCAGCGAGTTTTCCTGATCGGGGACAGCTCCGGAGGGAACTTAGT CCACCAGGTTGCGGTCAGAGCCGGATCGGCGGCGGCGGCGGCAGAACTCAGTCCGTTGAAGTTGGCCGGAGCAATTCCGATCCACCCGGGGTTTGTGCGG TCGACGAGGAGCAGATCTGAGATGGAGCAGCCGGAATCGCCGATGCTGACGCTGGATATGGTGGACAAGTTCTTGGGATTGGCCCTGCCGGTAGGGTCCA CAAAGGACCACCCGATAACGTGTCCGATGGGGCCCGCTGCTCCGGCGATGAAAGGGACTAAGCTGCCGCCGTATCTGATGGTGGTGGCGGAGAAGGATCT GGTGAAGAACACGGAGATGGAATTCTACGAGGCGATGAAGGAAGCCGGGAAAGAAGTGGAGCTGTTGATTAACGCCGGGATGGGACACAGCTTTTACCTG AACAAGATTGCGTTGGACTTAGACCCGTTGACTGCTGACGAGTTCGGGAAGATGATTGACGGGATTGTTCAGTTCGTCAACCGCCGCCGCTAA
AA sequence Show only first row Show all	>Lus10041632 pacid=23146631 polypeptide=Lus10041632 locus=Lus10041632.g ID=Lus10041632.BGIv1.0 annot-version=v1.0 MDRAPGGQGSVDRTWTGPPEAKFMSEPVPPHDHFVHGVSTRDVSINPNSRLKVRVYLPGPRPDAELKQKLPVFLHLHGGGFCISQPDWFMYYNTYTSLAR SANAVVVSVYLRLAPENRLPAACDDGFSALRWLASLSADQSNESWLTSVADFQRVFLIGDSSGGNLVHQVAVRAGSAAAAAELSPLKLAGAIPIHPGFVR STRSRSEMEQPESPMLTLDMVDKFLGLALPVGSTKDHPITCPMGPAAPAMKGTKLPPYLMVVAEKDLVKNTEMEFYEAMKEAGKEVELLINAGMGHSFYL NKIALDLDPLTADEFGKMIDGIVQFVNRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	0	1
					Lus10039878 [exp]	1.4	0.8782
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10024087 [exp]	2.0	0.8756
AT3G07720			Galactose oxidase/kelch repeat...		Lus10012345 [exp]	2.4	0.8622
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10022639 [exp]	4.9	0.8378
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	7.4	0.8253
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	7.6	0.7857
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	9.5	0.8499
					Lus10023370 [exp]	11.1	0.8601
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019568 [exp]	11.2	0.7897
AT5G17350			unknown protein		Lus10035268 [exp]	11.8	0.8311

Compare expression of checked genes

Lus10041632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.