Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 523 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 382 / 8e-131 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 374 / 8e-128 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 358 / 2e-121 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 328 / 8e-110 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 326 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 313 / 4e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 308 / 4e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 298 / 4e-98 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 284 / 9e-93 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026112 [exp] 618 / 0 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 607 / 0 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 585 / 0 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 572 / 0 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 327 / 2e-109 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 326 / 3e-109 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 325 / 5e-109 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 323 / 4e-108 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 323 / 5e-108 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192500 [exp] 578 / 0 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 564 / 0 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 511 / 0 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 508 / 2e-180 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 352 / 2e-119 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 337 / 2e-113 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 328 / 3e-110 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 328 / 5e-110 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 328 / 8e-110 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 300 / 2e-99 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10041634 pacid=23146843 polypeptide=Lus10041634 locus=Lus10041634.g ID=Lus10041634.BGIv1.0 annot-version=v1.0 ATGGAGAAGTTGAGGTGCAGCAAGTTCCTTGAGAGTTCAAAGCCATACTTTGCAATGATATCATTGCAGTTTGGTTATGCTGGTATGAACATCATCACTA AGGTCTCCCTCAACCGTGGCATGAGCCACTACGTCCTTGTCGTCTATCGCCATGCCTTTGCCACCGCTGTTATCGCTCCTTTCGCTCTCTTCTTCGAGAG GAAAGGGCAGCCCAAGATCACCTTCCCCATCTTCTTCCAAATTTTCATCCTTGGCCTTCTTGGACCAGTGATAGACCAAAACTTCTACTATGCTGGACTG AAGTACACATCTCCAACTTTTTCCTGTGCAATGAGCAACATGCTTCCCGCCATGACATTTGTGATGGCAGTCATTTGCCGGATGGAGAAGCTGGACGTGA AGAAAGTAAGGTGCCAAGCGAAGCTGGTAGGAACAATAGTAACGGTGGGAGGTGCAATGCTAATGACTTTGTACAAAGGACCCATTGTTGAAATGGTTTG GTCCAAAAGCTTCCACCCTCATCACCAGTCTTCTAATAATTCCTCCCATACCCCTAACTCAAGCAGTGACAAAGATTGGTTCAAGGGCTCCCTTCTTCTC ATCTTTGCCACTCTTGCTTGGGCCACTCTTTTTGTCTTGCAAACCAATGTGTTGAAGACATACAAGAACCACCAGCTGACACTGACATCACTGGTGTGCT TCATGGGGACACTGCAAGCAATTGCTGTCACTTTTGTGATGGAACATAAGCCCTCCGCCTGGAAGATCGGATTCGACATGAACCTCCTTGCTGCTGCTTA CGCTGGAATCGTGACCTCGAGCATATCGTACTATGTACAAGGGTTGGTGATCAAGAAGAAAGGTCCGGTTTTTGCTACGGCTTTTAGCCCCTTGATGATG ATTATTGTAGCAATCATGGGATCCTTCATATTGGCTGAGAAGATATTCCTTGGAGGAATCGTCGGATCAGTGTTGATAGTTATAGGGCTCTATGCAGTCC TGTGGGGGAAACAGAAGGAGAAGATGGACATGGATTTTAGTGATGAACCAGTCAAGGGAGCAGTTCACCCTAATGGGAGTTTCATGGAAGCCATGAAAGA TATTGAAGCAAATCATGAAGTAGAGAAATCAGAAGAAGGAAACAAGAAGCAGATGGCAGCTGTAACTGCACCAATTAGCATGCCTTTGGGTGGTGAAGTT TCATTGGAGAAGCTCAACCAAGTAGAGAGCAGCAATAGAGCCTAG
AA sequence Show only first row Show all	>Lus10041634 pacid=23146843 polypeptide=Lus10041634 locus=Lus10041634.g ID=Lus10041634.BGIv1.0 annot-version=v1.0 MEKLRCSKFLESSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFALFFERKGQPKITFPIFFQIFILGLLGPVIDQNFYYAGL KYTSPTFSCAMSNMLPAMTFVMAVICRMEKLDVKKVRCQAKLVGTIVTVGGAMLMTLYKGPIVEMVWSKSFHPHHQSSNNSSHTPNSSSDKDWFKGSLLL IFATLAWATLFVLQTNVLKTYKNHQLTLTSLVCFMGTLQAIAVTFVMEHKPSAWKIGFDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMM IIVAIMGSFILAEKIFLGGIVGSVLIVIGLYAVLWGKQKEKMDMDFSDEPVKGAVHPNGSFMEAMKDIEANHEVEKSEEGNKKQMAAVTAPISMPLGGEV SLEKLNQVESSNRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10041634 [exp]	0	1
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	2.4	0.9439
AT3G19550			unknown protein		Lus10002115 [exp]	4.0	0.9514
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	4.9	0.9350
					Lus10001872 [exp]	5.5	0.9439
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	6.2	0.9236
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	6.7	0.9413
AT3G05950			RmlC-like cupins superfamily p...		Lus10038456 [exp]	7.9	0.9349
AT3G19550			unknown protein		Lus10002114 [exp]	8.7	0.9414
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	14.0	0.9184
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10021993 [exp]	14.4	0.8985

Compare expression of checked genes

Lus10041634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.