Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38720 551 / 0 MAP65-5 microtubule-associated protein 65-5 (.1) AT4G26760 514 / 7e-178 MAP65-2 microtubule-associated protein 65-2 (.1) AT5G55230 485 / 2e-166 ATMAP65-1 microtubule-associated proteins 65-1 (.1.2) AT1G14690 415 / 8e-139 MAP65-7 microtubule-associated protein 65-7 (.1.2) AT2G01910 409 / 2e-136 ATMAP65-6 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) AT1G27920 395 / 2e-131 MAP65-8 microtubule-associated protein 65-8 (.1) AT5G51600 368 / 3e-119 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) AT3G60840 333 / 1e-106 MAP65-4 microtubule-associated protein 65-4 (.1) AT5G62250 298 / 6e-94 MAP65-9 microtubule-associated protein 65-9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008705 [exp] 877 / 0 AT2G38720 565 / 0.0 microtubule-associated protein 65-5 (.1) Lus10026114 [exp] 857 / 0 AT2G38720 553 / 0.0 microtubule-associated protein 65-5 (.1) Lus10032567 [exp] 492 / 6e-168 AT5G55230 850 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10043178 [exp] 480 / 1e-162 AT5G55230 847 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10031939 [exp] 426 / 1e-142 AT2G01910 838 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10035099 [exp] 423 / 1e-141 AT2G01910 822 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10015684 [exp] 408 / 3e-134 AT5G51600 759 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10037691 [exp] 407 / 4e-134 AT5G51600 768 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10015789 [exp] 397 / 5e-132 AT1G27920 673 / 0.0 microtubule-associated protein 65-8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192400 [exp] 758 / 0 AT2G38720 555 / 0.0 microtubule-associated protein 65-5 (.1) Potri.011G092500 [exp] 548 / 0 AT5G55230 863 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.001G356500 [exp] 519 / 9e-180 AT5G55230 853 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.003G173300 [exp] 438 / 5e-148 AT1G27920 655 / 0.0 microtubule-associated protein 65-8 (.1) Potri.008G139700 [exp] 409 / 1e-136 AT2G01910 778 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Potri.001G055100 [exp] 398 / 7e-132 AT1G27920 623 / 0.0 microtubule-associated protein 65-8 (.1) Potri.015G131400 [exp] 400 / 2e-131 AT5G51600 728 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.012G129600 [exp] 388 / 1e-126 AT5G51600 761 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.014G070100 [exp] 384 / 5e-125 AT5G51600 451 / 5e-149 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.001G032566 [exp] 154 / 2e-44 AT2G38720 135 / 6e-38 microtubule-associated protein 65-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03999 [flax] [poplar] MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 family)
Representative CDS sequence Show only first row Show all	>Lus10041635 pacid=23146932 polypeptide=Lus10041635 locus=Lus10041635.g ID=Lus10041635.BGIv1.0 annot-version=v1.0 ATGGCGACATCTCCTGCTCTCATCTCTCCCTCTCGTACGACTTGCGCTTCTCTTCTCCGCGAACTTGAGGTAATGTGGGATGAAATTGGGGAGCATGATG GCGAAAGGGACAGGATGCTTCGGAAACTTGAACAAGAGTGCCTTGATATATACCGTAGAAAGGTTGACATGACCAGAAAGCACAAGGCTGAGTTGGTTCA GTCTCTGGCTGAAGAAGAAACTGAAATTGCAAATATTGTTTCTGTTCTAGGGGAAACTGACTCTTTCTCTCAGAAGGTTAAAGGCACTTTGAAGCAGCAA TTGTCCGCTGTAGGACCTGTTCTGCAAGATTTGAGGCAGAAGAAGCAAGCAAGAATGAGTGAGTTTTATGAAACTCAGATGCAGATTGCCCAAATCTGTG CTGAAATAGCAGGAAACAATCTACCGAACAATCCCGATAACCTGCAAATTGATGAACATGATCTAACTGTCAAGAGACTGGGAGAACTTAAGTCACACCT CAAGGAACTTCTGACCGAAAAGAATTTGCGACTGCACAAGGTTAGCAGCTCTATTGGAAAAATTCATGAGCTCTCAGTTGTTATGTCAATCGATTTCTCG ACAACTCTCTCAGACATCCATCCCAGCTTAAGTGATCATACTCAGCAAAAGAGCATAAGCAATGACACACTAGCCCGACTAACTGATGTGATACAGTCTT TAAAGAAAGAGAAGCAAGAAAGGCTGCATAAGCTCCAAGATCTTGGGAAGACATTGATGGGGCTATGGGATCTCATGGACACAAATATAGAAGAGCGACA AAAATTTCAGCATGTCACATCACTAATATCTTCCTCAGTGGATGAGGCATCCAGAAAGGGCTGCCTTGCTGTAGAAGCGATCGAGCAGACTGAGGTCGAA GTTGAAAGATTAAATGTACTCAAAGCTAGCAAGATGAAGGATTTGGTTTTGAAGAGGCAAATTGAGCTGGAAACAATATACGAAGATGTTCATATGGATG TCGATAGTAATGCAGGAAGACAGGTTCTTATCAATCTCATTGAATCTGGTAATGTTGAGCTCGCTGATCTGCTTTCAAGTATGGACGACCAGGTAACAAA GGCAAAAGAGCTAGCACTAAGCCGGAAGGAGGTCTTGGAAAAGGTAGAGAAATGGAAACATGCATCTGAGGAAGAAAAGTGGCTTGAAGAATATGAAATG GATGGAAATCGGTACAGTGCTGGGCGAGGTGCGCATAAAAACTTGAAACGTGCTGAGAAGGCAAGGACTCTGGTCAGCAAAATACCATCTATGGTTGAGA TTTTGACTTCAAAGGTTAAAGCCTGGGAATCGGAGCGAGCCATTCGTTTCGAGTATGAGAAGGCACCACTGTTACGGATGCTAGATGAATATACGACATT GAGGCAGGAAAGGGAAGACAGGAAACGTCGCTCGAAGGAGCAGAAACGTCTACATGAGCAAAAGGCTGCGGAGCAAGAGGCAATTTATGGGTCGAGGCCA AAGAAACCACTTGGGCAAAGCAACATTAATAACACCTTGATTGGAACACCTATGGCGCGCCGAGGAGCCACCCCGTTGGGCCGTCACGCACCTTCAATTG GGAAGGAACGTAGAGAGAGCAAGTTCCATAACGTGACACCTATCAACTATGTTGCTCTTGCTAAGGACGATCCGGTCTCTCGCGGTGACTAG
AA sequence Show only first row Show all	>Lus10041635 pacid=23146932 polypeptide=Lus10041635 locus=Lus10041635.g ID=Lus10041635.BGIv1.0 annot-version=v1.0 MATSPALISPSRTTCASLLRELEVMWDEIGEHDGERDRMLRKLEQECLDIYRRKVDMTRKHKAELVQSLAEEETEIANIVSVLGETDSFSQKVKGTLKQQ LSAVGPVLQDLRQKKQARMSEFYETQMQIAQICAEIAGNNLPNNPDNLQIDEHDLTVKRLGELKSHLKELLTEKNLRLHKVSSSIGKIHELSVVMSIDFS TTLSDIHPSLSDHTQQKSISNDTLARLTDVIQSLKKEKQERLHKLQDLGKTLMGLWDLMDTNIEERQKFQHVTSLISSSVDEASRKGCLAVEAIEQTEVE VERLNVLKASKMKDLVLKRQIELETIYEDVHMDVDSNAGRQVLINLIESGNVELADLLSSMDDQVTKAKELALSRKEVLEKVEKWKHASEEEKWLEEYEM DGNRYSAGRGAHKNLKRAEKARTLVSKIPSMVEILTSKVKAWESERAIRFEYEKAPLLRMLDEYTTLRQEREDRKRRSKEQKRLHEQKAAEQEAIYGSRP KKPLGQSNINNTLIGTPMARRGATPLGRHAPSIGKERRESKFHNVTPINYVALAKDDPVSRGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	0	1
AT3G54750			unknown protein		Lus10029345 [exp]	1.0	0.9581
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	2.0	0.9575
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10024879 [exp]	3.9	0.9332
AT2G46980			unknown protein		Lus10038019 [exp]	3.9	0.9446
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	4.5	0.9209
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	5.5	0.9275
AT5G02370			ATP binding microtubule motor ...		Lus10025349 [exp]	5.7	0.9068
AT4G20160			unknown protein		Lus10038389 [exp]	5.8	0.9065
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	11.6	0.9228
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	11.8	0.9075

Compare expression of checked genes

Lus10041635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.