Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024084 [exp] 380 / 1e-135 ND / Lus10005395 [exp] 326 / 3e-114 ND / Lus10005397 [exp] 318 / 3e-111 ND / Lus10005398 [exp] 234 / 1e-78 ND / Lus10022893 [exp] 192 / 2e-61 ND / Lus10022894 [exp] 189 / 6e-60 ND / Lus10024931 [exp] 189 / 1e-59 ND / Lus10024932 [exp] 182 / 2e-57 ND / Lus10008233 [exp] 163 / 5e-48 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10041636 pacid=23147039 polypeptide=Lus10041636 locus=Lus10041636.g ID=Lus10041636.BGIv1.0 annot-version=v1.0 ATGACGTCTACAGTGGCCGGATTACCGAAATACGTGGTGCTCAAGTCCAAGTCCACCGGCAAGTACCTTCACTACCTATGGAACGACGAGTTCTCCGACT ACTACAAGCACATGGGATCCAAGCGCGACCTTGACCCAGTCAACCCTTTCGTGAAGCTTGAGGTTGTCCCCTCCACATCCGACCCCACACTCGTCCACCT CATCTGCTCCTACAACAACAAGTTCATCCAGCTCGTCTCCAATGGCGGCGTCTCCTGGCTCTCAGCCACCGCCGATTCCGCCGACGAGGACCGTACTAAG GAAACCTCCACCCTCTTCCAGCCCATCTTCCCCGCCGACGAGCCCAACACCGTCGAATTCCTGCACGTCCAGACCGACCGCAACGTGCGCCTCTTCGTCA ACAAGGACTACGACGACAAAATCAACAACGTGGCTTGCGCATACAGCAAAGACGGAGGGAGCGCTATCAACCGCTTCGAGTTCGCTGCGTGGGTGTCGTA CGAGGAGGTGATCAAGGCTAAGGACGACGAGATCGAGAAGCTCAAAGCACAGGCTGCAGCTGCTGGTGGGGACGACGATGAGAGTCTGAGTGCTGATGCC ATTGTTGAAGAGCTTAGGAAGGACATAAGGGAGCAGAACGACCAGCTGGAGGCGGCTTATAACGAGATTGATGCCTTGAAAGCTGCCGCCAAAGGCAACT GA
AA sequence Show only first row Show all	>Lus10041636 pacid=23147039 polypeptide=Lus10041636 locus=Lus10041636.g ID=Lus10041636.BGIv1.0 annot-version=v1.0 MTSTVAGLPKYVVLKSKSTGKYLHYLWNDEFSDYYKHMGSKRDLDPVNPFVKLEVVPSTSDPTLVHLICSYNNKFIQLVSNGGVSWLSATADSADEDRTK ETSTLFQPIFPADEPNTVEFLHVQTDRNVRLFVNKDYDDKINNVACAYSKDGGSAINRFEFAAWVSYEEVIKAKDDEIEKLKAQAAAAGGDDDESLSADA IVEELRKDIREQNDQLEAAYNEIDALKAAAKGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041636 [exp]	0	1
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	3.2	0.9680
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	4.6	0.9637
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	4.7	0.9639
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	5.1	0.9333
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	5.7	0.9274
AT4G18540			unknown protein		Lus10036092 [exp]	6.0	0.9450
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	6.5	0.9303
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	7.1	0.9419
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030438 [exp]	7.2	0.9177
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	7.2	0.9635

Compare expression of checked genes

Lus10041636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.