Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34540 64 / 1e-10 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT4G13310 64 / 1e-10 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G14620 60 / 3e-09 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT5G52400 60 / 3e-09 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT2G26710 59 / 3e-09 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G13710 59 / 5e-09 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT4G13290 59 / 6e-09 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT5G24900 59 / 7e-09 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT1G67110 58 / 1e-08 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT1G31800 58 / 1e-08 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024083 [exp] 675 / 0 AT4G37410 54 / 1e-07 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) Lus10008423 [exp] 73 / 2e-13 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10042487 [exp] 69 / 5e-12 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 66 / 5e-11 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10017771 [exp] 64 / 2e-10 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10033044 [exp] 64 / 2e-10 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10033555 [exp] 62 / 8e-10 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 61 / 1e-09 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10042486 [exp] 61 / 2e-09 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032800 [exp] 448 / 6e-153 AT1G75130 82 / 2e-16 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.003G192300 [exp] 437 / 8e-149 AT4G13310 79 / 2e-15 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) Potri.004G100400 [exp] 73 / 2e-13 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.007G081200 [exp] 72 / 3e-13 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G084500 [exp] 69 / 4e-12 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.017G114200 [exp] 67 / 1e-11 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.011G099200 [exp] 65 / 5e-11 AT3G14660 466 / 3e-163 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) Potri.011G101500 [exp] 65 / 8e-11 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 64 / 1e-10 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.018G070900 [exp] 63 / 3e-10 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041637 pacid=23146622 polypeptide=Lus10041637 locus=Lus10041637.g ID=Lus10041637.BGIv1.0 annot-version=v1.0 ATGATGACAGCCCCTCGTTTGAAGATGCTCCAATCAATATCTTCTCTCCCAGCCACCACCGCCAGCTCCTCCGCAGTTGCCTTTCCGGTGGTGGTGGTTG TTCCAGCAGCAGCGACTACGACTACCCGACCCGGGTGTTCAATGTCTTCCTCTGGGTTTCACTCATCGCAGTCACTGCTCTGTTGCTTGAGAAGCTCTTC CTCTTGCTCAGATTCTGGACCAAGTCAAGCAAAATCCCCGGCCCTCCTTCTCCTTCCTTCTTCCGCCACTCTCCCCGCTTTGGATCTCGCCAGAGCTTCC TCGTCACATAACAAATATGGATCAATTTTCAAATTCTGGCTGGGGCCTTCTCAGCTTATGGTATCCATAGACGATCCGAACCTGGTTAGGGAGATTCTTT CAAAGGCTCAGGAGAAATTGCCCTTCACTGGCAAGGCTTTCCGTTTGGCATTTGGTCCATCCAGCCTCTTCTTCTGCTCCTATGAACAACAGAGAAGAAA GGAGTCATTTGCATTGGAATTGAATGAAAAACTAGTAGGGAGAGCACATATGCTCTCTACAACTGTTGTGAAGTATGTGATGGAGAAGGTAGACAAGAGT ATGAACTGCTCAACACTTTCTCAGCATCTGGCCTTCAGTTATCTGGGCACTTTGCTCTTTGGAGATGCATTTCTTACTTGGTCCAAGGCTTCTTCCTACG AGGATCTTCTAATGGTGATTGCCAAAGATGCTCCTTTCTGGGCTTCGCATGCCATCACCCCCTTTTGGAGAAAGGAATTTCGAAGGTTCCGGTCCTCATG TGCTCAGTTCAAAGCTCTGACTGAAGATATAGTCGAACAGTGTATGACGATGAACTACCAAACCGACATGGATCAAAATTTATTGGCTGATCAGTTTGAA TTATGCCACCTTAATTCAAGAGAATTGTTATATGGGAACATTATGGGCATCATGTTTCATGGATGTCTGTCTACAGCTGGTCTAATTAGTGCTGTACTAG AAAGGCTGGCTTCATATCCTAACATACAAGACAAGATATACACGGAAATAACCATGTCACGAAGTGTATCTTCTAAAGAAAGACATCAAGTTGAGGAGAT GGCATTGTTATTAGCTACAATATATGAATCAGCTCGCCTGATGCCATCTGGACTTTTACTGCAGAGATGTTTGAAAAGTGACTTGAGTCTAAAAAACGGT GTGGATGTACCAGCTGGAGCTGTGATCATGGTACCTGTGCAGTTGATGCATATGAAAAGCTGTAGTTGGGGTGATGATGCTGGAAATTTCAACCCATACC GTTTTTTGTCAAAGTCTGTAGAGGCTTCTGATTTGAACGCGGCGACAGCTTGCCCAGAAGAAGTAAATGGAGATGAGGGACCATTGATTCTGAATGATCC AAACAACAATCCAGCATTCCTTGCCTTTGGTTCTGGTGTGTGTCGGAGTTCAGTGACGAGAGTAATCGCCGTTATGTTGACTTCCTTCCTTGAATCCTAT GAGCTGACTTGCTCATGTGGTGTACTCACCAAAAATGACAGGTCAAGATCCATTCAGGGTCAGGGAGTGAGCTGA
AA sequence Show only first row Show all	>Lus10041637 pacid=23146622 polypeptide=Lus10041637 locus=Lus10041637.g ID=Lus10041637.BGIv1.0 annot-version=v1.0 MMTAPRLKMLQSISSLPATTASSSAVAFPVVVVVPAAATTTTRPGCSMSSSGFHSSQSLLCCLRSSSSCSDSGPSQAKSPALLLLPSSATLPALDLARAS SSHNKYGSIFKFWLGPSQLMVSIDDPNLVREILSKAQEKLPFTGKAFRLAFGPSSLFFCSYEQQRRKESFALELNEKLVGRAHMLSTTVVKYVMEKVDKS MNCSTLSQHLAFSYLGTLLFGDAFLTWSKASSYEDLLMVIAKDAPFWASHAITPFWRKEFRRFRSSCAQFKALTEDIVEQCMTMNYQTDMDQNLLADQFE LCHLNSRELLYGNIMGIMFHGCLSTAGLISAVLERLASYPNIQDKIYTEITMSRSVSSKERHQVEEMALLLATIYESARLMPSGLLLQRCLKSDLSLKNG VDVPAGAVIMVPVQLMHMKSCSWGDDAGNFNPYRFLSKSVEASDLNAATACPEEVNGDEGPLILNDPNNNPAFLAFGSGVCRSSVTRVIAVMLTSFLESY ELTCSCGVLTKNDRSRSIQGQGVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34540		CYP94D1	"cytochrome P450, family 94, s...		Lus10041637 [exp]	0	1
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10004026 [exp]	2.0	0.9516
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	2.8	0.9534
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	7.9	0.9487
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	8.8	0.9494
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	9.3	0.9514
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	11.4	0.9269
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	12.0	0.9252
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	13.1	0.9512
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	13.9	0.9045
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	17.8	0.9194

Compare expression of checked genes

Lus10041637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.