Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12480 170 / 2e-51 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT5G19490 120 / 2e-32 CCAAT Histone superfamily protein (.1) AT1G54830 48 / 2e-06 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT1G08970 47 / 3e-06 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT3G48590 47 / 5e-06 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G63470 47 / 6e-06 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT1G56170 45 / 9e-06 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT5G50490 44 / 3e-05 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50480 44 / 4e-05 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 42 / 0.0002 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008701 [exp] 270 / 1e-90 AT3G12480 194 / 8e-61 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10024082 [exp] 256 / 1e-85 AT3G12480 81 / 5e-18 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10026118 [exp] 248 / 6e-82 AT3G12480 181 / 9e-56 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10026780 [exp] 133 / 4e-37 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10024515 [exp] 48 / 8e-07 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 45 / 5e-06 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10016750 [exp] 47 / 6e-06 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10041221 [exp] 47 / 6e-06 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 47 / 7e-06 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G033200 [exp] 251 / 1e-82 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.003G192100 [exp] 247 / 2e-81 AT3G12480 224 / 4e-72 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G225400 [exp] 137 / 2e-38 AT3G12480 180 / 1e-54 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.009G022050 [exp] 114 / 1e-29 AT3G12480 118 / 3e-31 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G106900 [exp] 49 / 2e-07 AT1G54830 112 / 6e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.003G124500 [exp] 47 / 6e-07 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.015G097400 [exp] 47 / 4e-06 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 47 / 4e-06 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.005G094900 [exp] 47 / 7e-06 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.005G035800 [exp] 47 / 8e-06 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10041638 pacid=23146791 polypeptide=Lus10041638 locus=Lus10041638.g ID=Lus10041638.BGIv1.0 annot-version=v1.0 ATGCAAGCTGATGAAGATGTTGGCAAGATAGCTCTAGCAGTACCTGTTTTAGTTTCTAAAGCGTTAGAATTGTTTCTCCAAGACCTTTGTGATCGTACAT ATGAAGTCACCCTTCAAAGAGGAGCAAAGACCATGAGTTCCCTGCACCTAAAACATTGTGTACAGAGCTATAATGTATTTGATTTTCTGCGGGAAATCGT CAGCAAGGTTCCTGATTATAGCCATGGTCATGGACACTCTGATGGATCTGCAGATCATAGAAACCTTCATAAAAGGAAGTCGAATATAGATGAAGGCAAT GACAGCGATGACGAATTTAAGAGAACCAGGACGCATGATCAGAGCCATGCGGGTGGCAGCGGTAGAGGAAGAGGTCGTGGTCGAGGAAGGGGCAGAGGCC GAAGTGCTCGGAACATGGAAAGAGAATCTTCTCATCACGAGGGTGAGTATGAAGCTTGCACAACTCCGCAGGGCACCGGAAGCACCTCGTTTCCCAGAGC ATCGGTAGAAGAAAGAGCAGAATCAAAGGAGATGGTAAAAGAGCATATGACAATTACTGATGGTGCTAATCAAGCTGAAAGGAACTTCGATCTAAATGCT GACGTTAAAGACGGAGAAGATGCAAAAGTTGCAGCCTCGGCAGCAGCTTCCTTAGCATCAGTTCCAGCAGCTGTCCAAAGTTCATCCGCAGTGCCTGCTA CCGAGACCACCCGTGAAGAATATCCTGGCTGGTCACTTTCCGAGGTGGCCATTGATCCCCTGCAACTTGCACAGCTCGGCAGAAGAATAGATGAGGACGA GGAAGATTACGATGAAGAAGGATGA
AA sequence Show only first row Show all	>Lus10041638 pacid=23146791 polypeptide=Lus10041638 locus=Lus10041638.g ID=Lus10041638.BGIv1.0 annot-version=v1.0 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEVTLQRGAKTMSSLHLKHCVQSYNVFDFLREIVSKVPDYSHGHGHSDGSADHRNLHKRKSNIDEGN DSDDEFKRTRTHDQSHAGGSGRGRGRGRGRGRGRSARNMERESSHHEGEYEACTTPQGTGSTSFPRASVEERAESKEMVKEHMTITDGANQAERNFDLNA DVKDGEDAKVAASAAASLASVPAAVQSSSAVPATETTREEYPGWSLSEVAIDPLQLAQLGRRIDEDEEDYDEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	0	1
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	1.0	0.8766
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	2.0	0.8672
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	3.0	0.8580
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	3.5	0.8359
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	4.5	0.8222
AT1G02330			unknown protein		Lus10042403 [exp]	4.9	0.8068
AT1G55170			unknown protein		Lus10034321 [exp]	4.9	0.8215
AT5G13760			Plasma-membrane choline transp...		Lus10005331 [exp]	6.6	0.7924
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	8.3	0.7904
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10032748 [exp]	8.6	0.7770

Compare expression of checked genes

Lus10041638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.