Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61500 327 / 8e-100 S-locus lectin protein kinase family protein (.1) AT4G11900 327 / 1e-99 S-locus lectin protein kinase family protein (.1) AT4G23180 319 / 4e-98 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 317 / 1e-97 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT1G61550 318 / 1e-96 S-locus lectin protein kinase family protein (.1) AT1G61420 317 / 3e-96 S-locus lectin protein kinase family protein (.1) AT1G61610 318 / 4e-96 S-locus lectin protein kinase family protein (.1) AT4G21390 317 / 1e-95 B120 S-locus lectin protein kinase family protein (.1) AT1G61440 315 / 2e-95 S-locus lectin protein kinase family protein (.1) AT1G61490 315 / 2e-95 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024081 [exp] 1474 / 0 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10019061 [exp] 582 / 0 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10036314 [exp] 370 / 1e-121 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 315 / 2e-100 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 315 / 8e-100 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 331 / 3e-98 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 321 / 2e-96 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 318 / 2e-96 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 318 / 3e-96 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111600 [exp] 686 / 0 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G111900 [exp] 624 / 0 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111800 [exp] 599 / 0 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111700 [exp] 598 / 0 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.001G437950 [exp] 330 / 4e-106 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.011G036466 [exp] 327 / 4e-105 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.001G442200 [exp] 340 / 6e-105 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.004G023550 [exp] 335 / 2e-104 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G036400 [exp] 338 / 4e-104 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G441400 [exp] 337 / 6e-104 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18 CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041639 pacid=23146829 polypeptide=Lus10041639 locus=Lus10041639.g ID=Lus10041639.BGIv1.0 annot-version=v1.0 ATGATGCCAACAGTACTATTACCGTCTCCAAATCTCGTCATCATTCTGATAATTGCTTCTTCGCTTCTTTCTATGGCAAATGCGCGCCATTTGATCAGAG GAGGGTACTGGGTTGTCTCCGATTTCGGACCTCCCGGCGTCGCCGCCGCCATCAACGCTACTCTCTACACTCACCTCATCTGCGGTTACGCAACCATCAA CCGAACCACCTACCAAGTTTCAATCAGCCCTTCCGACCGGCCACACTTCGCCAACTTCACCTCCGCCGTCCGCCGCCACAACCCCTCCGTCACAACCCTG TACTCAATCAGCGACGGTGGCGATTCCAACAACTCCGCCGCGTTCTCCGCCATGCTCAACAACTCCTCCCACCGCAAGGCTTTCATTCAGACCGCGATAC AAACAGCTAGAACGCACGGCTTCAGAGGCATTGACTTCTCCTGGTCAAACGACTCCCCTGACGACCTCGCCAACATCGGCACTCTGTTCCGAGAATGGCG CGTGCAAATCAACTCCGCCGCCGGGGAAAGGAGGCTGTTGTTGACGGCGGCGTTCGACTACGCGCCGGGGATGGGCGTGAGGAATTTCCCGGTTGGTTCG ATTCGGAACAACTTGGATTGGGTCCACGTGATGGCGCAGAACCTGGAATCTTCGACGGCGATGGAGCCCGACTCGCCTCTCGACGACCCGGAATTCTTGT CGGCGACCAGATCCGGAATCGACGCGTGGATATCGGTGGGGAAGGTTCCTCCGGAGAAGCTTGTACTTAGTCTGCCGTTGTACGGCTTCGCCTGGAAATT GGCCAACCCGGCGGCGGCGAAGGGGAATTACATTGGGGCTCGGGTGAGCGGGCCGGCGGTTAACAAAGAAGGAGGAGGGTTCTTGAGTTACGGAGAGATT AAGGAGATAACGAATGGGTCGGAGATATTGTACAACTCGACGTACGCGGTGAATTACTGCACGGTGAATGGCTCTGTCTCGGTGATATTTGATGGGCCTG AAGCAATTGGAGCTAAGGTTTCGTATACGACGGGGATGCATCTTGGTGGGTATTATGTTTGGCAGATACCTTTTGATTATAACGGAGAACTAGCTCTCGT TGCAGCGAAAGAGCAAGGCAAGAAACAGAGTCAACTAAAGAAGCGGGAACGGGTGTTAGCAGGGACAGTATCTGTTGCTGTATTTCTCACAATAATTCTA AGCATCGCTGCATTTTACTGGATCAGGATCAGGGGACTTGGAAGATTTAAGGCATTACTATCATTCGGAGGATCAGTTTCCAACCTGAGAGTCGAGGACA TAGAAGGCTCCGGAGATTTTTCTCGAAATGATGCGGTCCCTAATCTCAGAGTCTATAGTTTCGATGAGATTAACAAGGCAACCAATGGATTCTCCCTTCA AAATAAGCTTGGACGGGGTGGCTATGGTCCTGTTTACAAGGGTGTTTTACCTGATGGACAAGACATAGCAGTGAAGAAGCTATCTGAAACATCAACCCAG GGACTGCAGGAATTCAAGAATGAAGTTCAACTTAACGCCAGAATCCAGCATGTAAATCTGGTCAGAGTTCTTGGATACTGTATCGATAATGACGAGAAGC TGCTCATCTATGAGTTCATGCCCAACAATAGCCTCGACAAATACCTCTATGACTCGGCCAAGCGGGACATTCTAGACTGGAGCAGAAGAGTGGAAATCAT TCAAGGGATAACTCAAGGACTGGTGTATCTCCAGGAATATTCAAGGCTACCCATCATACACAGAGACTTGAAAGCCAGCAACATCTTGCTCGACAGTGAC TTCCTCCCCAAGATATCTGACTTTGGGATTGCTAAAGTCTTCTCCAAGAATGGAGAAGAAACAAACACTGTCAGGATCGTTGGAACAATCGGATACACTC CACCAGAATATTTTAGACAAGGAACCTATTCTGTCAAATCAGATGTCTATGGCTTTGGAGTTTTACTGCTGCAGATCATCACGAGTAAGAAGGTTGCTCG GATGTATGGCCTTGCTGGAGATTCCAGCCTTCAGGAATATGCATTTGAGGTGTGGGAAGATGGGAGAGGGATGGAGATAGTGGACTCAAGTCTGGATGAC TCATCGTCATCCTGCAAACTGCTGACTTGCTTGAGAATTGCTTTGCTTTGTGTCCAGGACGACCCTATTGATCGACCTTCCATGCTTCAAGTAGCTTCAA TGCTCAGGAACGAAACCGTCGTTGGATCTCTCTTTCCAAAGAAGCCAACCTTCTCATTCAAACGGCAAGGAGATAATAATGTAGAGCTACCTGCAGTTTT GCAGCCTGCGTTTTGCTCAATAGCTGATGGCACATTTACCGAACTTGAGGGCCGATAA
AA sequence Show only first row Show all	>Lus10041639 pacid=23146829 polypeptide=Lus10041639 locus=Lus10041639.g ID=Lus10041639.BGIv1.0 annot-version=v1.0 MMPTVLLPSPNLVIILIIASSLLSMANARHLIRGGYWVVSDFGPPGVAAAINATLYTHLICGYATINRTTYQVSISPSDRPHFANFTSAVRRHNPSVTTL YSISDGGDSNNSAAFSAMLNNSSHRKAFIQTAIQTARTHGFRGIDFSWSNDSPDDLANIGTLFREWRVQINSAAGERRLLLTAAFDYAPGMGVRNFPVGS IRNNLDWVHVMAQNLESSTAMEPDSPLDDPEFLSATRSGIDAWISVGKVPPEKLVLSLPLYGFAWKLANPAAAKGNYIGARVSGPAVNKEGGGFLSYGEI KEITNGSEILYNSTYAVNYCTVNGSVSVIFDGPEAIGAKVSYTTGMHLGGYYVWQIPFDYNGELALVAAKEQGKKQSQLKKRERVLAGTVSVAVFLTIIL SIAAFYWIRIRGLGRFKALLSFGGSVSNLRVEDIEGSGDFSRNDAVPNLRVYSFDEINKATNGFSLQNKLGRGGYGPVYKGVLPDGQDIAVKKLSETSTQ GLQEFKNEVQLNARIQHVNLVRVLGYCIDNDEKLLIYEFMPNNSLDKYLYDSAKRDILDWSRRVEIIQGITQGLVYLQEYSRLPIIHRDLKASNILLDSD FLPKISDFGIAKVFSKNGEETNTVRIVGTIGYTPPEYFRQGTYSVKSDVYGFGVLLLQIITSKKVARMYGLAGDSSLQEYAFEVWEDGRGMEIVDSSLDD SSSSCKLLTCLRIALLCVQDDPIDRPSMLQVASMLRNETVVGSLFPKKPTFSFKRQGDNNVELPAVLQPAFCSIADGTFTELEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11900			S-locus lectin protein kinase ...		Lus10041639 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	3.3	0.7531
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	8.9	0.7520
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10035076 [exp]	9.1	0.6564
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	11.8	0.7128
AT4G14385			unknown protein		Lus10033887 [exp]	12.1	0.7416
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10004828 [exp]	13.2	0.7204
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	24.2	0.7243
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	27.8	0.7142
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	40.6	0.7169
AT3G10130			SOUL heme-binding family prote...		Lus10014203 [exp]	75.2	0.6227

Compare expression of checked genes

Lus10041639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.