Plant FIBer expression Database

Lus10041640 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26920 173 / 5e-47 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
AT5G12120 166 / 9e-45 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024080
[exp]
692 / 0 AT2G26920 181 / 3e-50 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Lus10036096
[exp]
196 / 8e-55 AT2G26920 473 / 6e-159 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Lus10026781
[exp]
191 / 4e-53 AT2G26920 468 / 3e-157 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G191600
[exp]
202 / 2e-57 AT2G26920 275 / 3e-83 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Potri.001G225200
[exp]
190 / 6e-53 AT2G26920 424 / 1e-140 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Potri.001G033600
[exp]
189 / 1e-52 AT2G26920 267 / 2e-80 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Potri.009G021900
[exp]
187 / 6e-52 AT2G26920 412 / 3e-135 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0214 UBA PF00627 UBA UBA/TS-N domain
Representative CDS sequence
>Lus10041640 pacid=23146903 polypeptide=Lus10041640 locus=Lus10041640.g ID=Lus10041640.BGIv1.0 annot-version=v1.0
ATGGCGCCATCCAAGTCGAAGAAGAAATCAAACAAAACTGACGCCGCGAAATCCCCCAAACAGCTACAGAACAAGACAGCTATTGCTAATACGAACAGCC
CCACTTCCAGCCCCACTTCCAGCCCACTGGATATCCTTTCATCCTCGCCGGATTCTTCGTCTTCCTCCTCCTCCTCTTCTGCCGACCATCGTCATGGAAC
GACATTGCTCTATTTCGAATCCGATCCCTTCACCGGGGCCAGCTGCTACTCAGGGGAGGAAGATCCCCCGACAAAAGAATCACTTACGAAAACTGCCCAG
CCGGAGAGCAGTTACATTACTGTCCCCGGCCTGGACAACGACCGACGGGAGAAGATCCGATCGAAGAACGAGAAGAAGCACGCCCGACAGAAGGAACGAC
GAGTTCAGGAGCTCCACGACCGCTGCTGTGGAGTCCTGACGTCGAGGAAGCTGGAATCGCTAGCGCAACAGATCGTGGCTATGGGATTCTCCAAGGATCG
GGCCGCGACGGCGCTAATAATGAACGAAGGTAAGGTTGAGGAATCGGTGAATTGGCTCTTCGAAGGAAACGGAGATAATAATAATGATAATGACAACGGC
CAGAGTGAGATTAGCGGATCTGAAAAATTGAGGAATTCAGGGCTGAAAATTGACATCAGCGAGGAGCTGGCTCAGATTTCGGCAATGGAGATGAAGTTTA
AATGTTCCAAGCAGGACGTCGAGCGGGCTGTTGTGGGAAGTGAAGGTCATCTCGACAAGGCGATGGAGGTTCTGGTGGCTTCTCAGAAGCCAGCCCAGCC
TCCGTCTCCTCCTCCTCTTCCACCGGCACCGCAACATGGAAATGTCCATATTGTCCAGCGGAAAAGGATGCTCCAAAACGAAATGTGGGGAGGCAACGGC
CATGGATTTGGGTCATCTCTTTTGCCAGCAGGGAGATCGCAGCATCCGAGTTCCAATCCATATACACTTCCTACTGCAGCCAGATGGTATTCCCGCAATA
ATGTTCCAATGGTGTTAAATCAAAGGTCTCATCACCAACACCACCGCCATGGTCCGGCTTCATACAAAGAAACTCCGTTTTTGTTCAGCAATCCAATGGA
TGCTTCTTCCGCAGCTAGGATGGAAGGTGGTTCTTCATGGACGGGTGGCGGTAGATCATCGAATTTGCCGTCACTAGCAGCTCCATCGTCTCTGGGACTG
TTTGCCAGCTGGGGATCATCAAATTCGCAGGTTGATTGGAACACGGGAGGTTTGATGTCGAATTTCGATTATACAAATATAGACTGGAGTTTGGACTCAA
ACTTGCTACCAGCTGCTGCTTCAAACAAGTCAAGGAGGAGGATGTGGGTAGGAATCTCTTCATTGTTGATGGGCAACAACAATTCTTCTTGTTCTTCTTC
TTCTTCTTCAGGGAATCGGAGGAATGGGGCTGTGGGAACTTCATCGTCATCGTCTTCTGTGCCAGAGTGGACCTCTACTTTCGCTCAGAAGGACATGTTT
AGTTTGTATCGACAGTTCGTTACATCACCCTCTCTTTAA
AA sequence
>Lus10041640 pacid=23146903 polypeptide=Lus10041640 locus=Lus10041640.g ID=Lus10041640.BGIv1.0 annot-version=v1.0
MAPSKSKKKSNKTDAAKSPKQLQNKTAIANTNSPTSSPTSSPLDILSSSPDSSSSSSSSSADHRHGTTLLYFESDPFTGASCYSGEEDPPTKESLTKTAQ
PESSYITVPGLDNDRREKIRSKNEKKHARQKERRVQELHDRCCGVLTSRKLESLAQQIVAMGFSKDRAATALIMNEGKVEESVNWLFEGNGDNNNDNDNG
QSEISGSEKLRNSGLKIDISEELAQISAMEMKFKCSKQDVERAVVGSEGHLDKAMEVLVASQKPAQPPSPPPLPPAPQHGNVHIVQRKRMLQNEMWGGNG
HGFGSSLLPAGRSQHPSSNPYTLPTAARWYSRNNVPMVLNQRSHHQHHRHGPASYKETPFLFSNPMDASSAARMEGGSSWTGGGRSSNLPSLAAPSSLGL
FASWGSSNSQVDWNTGGLMSNFDYTNIDWSLDSNLLPAAASNKSRRRMWVGISSLLMGNNNSSCSSSSSSGNRRNGAVGTSSSSSSVPEWTSTFAQKDMF
SLYRQFVTSPSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26920 Ubiquitin-associated/translati... Lus10041640
[exp]
0 1
AT5G61150 VIP4 VERNALIZATION INDEPENDENCE 4, ... Lus10021161
[exp]
4.5 0.8194
Lus10009962
[exp]
5.9 0.8012
AT1G49950 MYB ATTRB1, TRB1 telomere repeat binding factor... Lus10012092
[exp]
9.2 0.8111
AT3G22400 ATLOX5, LOX5 Arabidopsis thaliana lipoxygen... Lus10004915
[exp]
11.2 0.7739
AT1G72650 MYB TRFL6 TRF-like 6 (.1.2) Lus10037678
[exp]
13.4 0.7908
AT5G43900 XI-6, XI-2, ATM... MYOSIN XI-6, MYOSIN X1 2, ARAB... Lus10023696
[exp]
16.4 0.8034
AT1G77930 Chaperone DnaJ-domain superfam... Lus10001296
[exp]
21.6 0.8036
AT5G53350 CLPX CLP protease regulatory subuni... Lus10036701
[exp]
21.9 0.8140
AT5G22850 Eukaryotic aspartyl protease f... Lus10005356
[exp]
23.0 0.7756
AT3G14205 Phosphoinositide phosphatase f... Lus10013184
[exp]
24.3 0.8097

Lus10041640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.