Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14100 426 / 5e-144 FUT8 fucosyltransferase 8 (.1) AT1G14070 416 / 4e-140 FUT7 fucosyltransferase 7 (.1) AT2G03220 416 / 2e-139 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT1G14080 414 / 2e-139 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G03210 414 / 5e-139 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT2G15370 376 / 2e-124 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G14110 373 / 4e-124 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15390 372 / 3e-123 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15350 363 / 1e-120 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G74420 316 / 3e-101 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008696 [exp] 432 / 6e-146 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10036776 [exp] 428 / 8e-144 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 373 / 5e-123 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10029049 [exp] 364 / 3e-119 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10037152 [exp] 351 / 2e-116 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026128 [exp] 343 / 2e-111 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 332 / 3e-107 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 314 / 2e-100 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 310 / 7e-99 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191200 [exp] 507 / 2e-175 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 505 / 1e-174 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 483 / 5e-164 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 474 / 3e-161 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 473 / 2e-160 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 467 / 2e-159 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 449 / 3e-152 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041641 pacid=23146852 polypeptide=Lus10041641 locus=Lus10041641.g ID=Lus10041641.BGIv1.0 annot-version=v1.0 ATGGATAAACGACAGGGATTCGTCGCTTCCCAGAGGTTCATAGCCTCAATGGCCGTTTGTTTCCTAGTTTTTCCTGTTCTGGTCATTGTGATCCCTGGGA TCTATAAGAAATCATATTTCTTCGATGAGATTGGACGATCGTACAGACCACACCCAGTTGGTGAAAAAGCTCGTAATTTCACTGGGTCGTCGTCAGATCT TGGTAAAAATAACCACACAAGTGGATCTGGAGATGTAAAGTTCCAGAAACTAGGCAAGGCTCACCAACTGTTTGATGGTTTGCCTGCTCAAAGGTCTGAT GATAAATCGTGCTTGAGCAGATTAGAGAGTCACATTTATCGCAAGAGTGGAACCCAGAGGAAACCTTCTGCTTATCTAGCCTCGAAACTGCGTAGCTACG AGGATCTACACAGGCGCTGCGGCCCTAACACTTCTTCCTACAAGAGAGCCACAGAGGTTATCGGTTCAGGCGACATGAATACCTTTAGTACTAGCTGTAA ATATATCGTATGGCATCCTGTTCATGGGTTGGGAAATAGAATCGTTAGTCTGGCATCAACATTTCTTTATGCCCTGCTAAGTAACAGAGTACTTCTTGCT AATCTTGGGGAAGATATGACTAACCTTTTCTGCGAACCGTTTATGGGTTCATCCTGGGCATTGCCTATGGATTTCCCTCTTAAGAGCTCTTTCGATAGTG GTAAGTTCAGATTTACTCACAATGTTGGCAGTGCTCTGAAGAATGGCACGTTGAAGGTGACGGAGGAGTCCCCAGAAGCACCACCGTTCCTGTTTCTGAA CCTATACAAAGGGAACAACCTTGGAGATTATTGTTTTTACTGTGATCAAAGCCATTCATTTCTTAGCAGAATCCCCTGGCTGATTATCGTATCAGATCAA TATTTTGCTCCTTCATTCTTCCTGATCCCGTCCTTCAAACAGGAGGTGAACAAATTGTTTCCGGAGAAAGAGGCTGTGTTCCATCACCTGGTTAATTATC TTGTGCTCCCTTCAAATCAGGCTTGGGGAATGATCACCAGATTCTATGAAGCAAACCTTGTTGGAGCAAATGAAAGGGTTGGCCTCCAAGTACGACTCTT CAAAGCCGGATTTCGCAAGTCTTCAGTTCTTACTGATCAGATACTGGCTTGCTTGGTGAATCAAACCCTTATTCCCAAGATAGACAGCCATAAAGCCGGA ACCTCACCACTCAGAAACCAGACGAAAAAAGCTGTTCTAATAACATCCTTGTACCCTCAGTTCTATCAGAATCTCAGCAGCATGTACTCAAACAAACCAA CTGTGAATGGTGAAGTCATCAGGTTTTACCAACCAAGTCATGAGGAGACACAGAAGTTTAAGGACAGTGATCACAACATCAAGGCATTGGTTGAGATATA TTTGCTTAGCATGTGCGAGAAGTTGGTGATTAGCTCAAAGTCAACATTCGGGTATGTAGCTCAGGGTTTAGGGGATAACAAGGCATGGGTCCTGAGACGG CCAGGAAATGGTGCTTCTGATCCTTGTGTGAGAGACTTGTCACCAGATCCATGCTTTCACTATCCTCCAATGAGGAGCTGCGATGTTGGTAGTAACAAGA ACAACAACAGATATGTTGATATTGCTGATCATGTTCCCTTTATGAAGCATTGCAAGGACCAGAAGATCGGAGTGAAACTAGTCGACGTTCATGAGGAGTT GTAG
AA sequence Show only first row Show all	>Lus10041641 pacid=23146852 polypeptide=Lus10041641 locus=Lus10041641.g ID=Lus10041641.BGIv1.0 annot-version=v1.0 MDKRQGFVASQRFIASMAVCFLVFPVLVIVIPGIYKKSYFFDEIGRSYRPHPVGEKARNFTGSSSDLGKNNHTSGSGDVKFQKLGKAHQLFDGLPAQRSD DKSCLSRLESHIYRKSGTQRKPSAYLASKLRSYEDLHRRCGPNTSSYKRATEVIGSGDMNTFSTSCKYIVWHPVHGLGNRIVSLASTFLYALLSNRVLLA NLGEDMTNLFCEPFMGSSWALPMDFPLKSSFDSGKFRFTHNVGSALKNGTLKVTEESPEAPPFLFLNLYKGNNLGDYCFYCDQSHSFLSRIPWLIIVSDQ YFAPSFFLIPSFKQEVNKLFPEKEAVFHHLVNYLVLPSNQAWGMITRFYEANLVGANERVGLQVRLFKAGFRKSSVLTDQILACLVNQTLIPKIDSHKAG TSPLRNQTKKAVLITSLYPQFYQNLSSMYSNKPTVNGEVIRFYQPSHEETQKFKDSDHNIKALVEIYLLSMCEKLVISSKSTFGYVAQGLGDNKAWVLRR PGNGASDPCVRDLSPDPCFHYPPMRSCDVGSNKNNNRYVDIADHVPFMKHCKDQKIGVKLVDVHEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14100		FUT8	fucosyltransferase 8 (.1)		Lus10041641 [exp]	0	1
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	2.0	0.9291
AT4G32350			Regulator of Vps4 activity in ...		Lus10034905 [exp]	5.5	0.8816
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	8.7	0.8955
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	8.9	0.9131
AT4G39420			unknown protein		Lus10006813 [exp]	9.2	0.8929
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	12.5	0.9121
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	12.6	0.8896
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	15.3	0.9107
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	15.9	0.9002
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	17.4	0.9128

Compare expression of checked genes

Lus10041641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.