Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 442 / 2e-150 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 422 / 6e-143 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14070 387 / 1e-129 FUT7 fucosyltransferase 7 (.1) AT1G14100 383 / 1e-127 FUT8 fucosyltransferase 8 (.1) AT1G14080 358 / 3e-118 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15350 347 / 6e-115 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT2G15390 350 / 7e-115 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 339 / 1e-110 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G74420 328 / 2e-106 ATFUT3, FUT3 fucosyltransferase 3 (.1.2) AT1G14110 326 / 4e-106 ATFUT9, FUT9 fucosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026128 [exp] 488 / 1e-168 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 445 / 7e-152 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 434 / 1e-147 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 421 / 4e-142 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10036776 [exp] 422 / 8e-142 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 412 / 5e-139 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 397 / 8e-133 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10037152 [exp] 381 / 2e-128 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041645 [exp] 380 / 4e-127 AT2G03220 315 / 2e-101 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191200 [exp] 504 / 9e-175 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 500 / 4e-173 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 500 / 8e-173 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 466 / 2e-159 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 456 / 8e-154 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 452 / 8e-153 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 406 / 6e-135 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041642 pacid=23146732 polypeptide=Lus10041642 locus=Lus10041642.g ID=Lus10041642.BGIv1.0 annot-version=v1.0 ATGGGGACACATGAGTTCACCTCCAGCAAGTTCACAGTAGCGATAGTGGCTGCTTCCATGGTGATGTCAATCATACTCATAGCCACCATCTTTTTCCCCA ACCCATTTTCAGATCTCGCCCAGAAATTCTCCCCATCTCAGAAGCCCATCACTACTTCTCCAACCACCACTACCAGATTCTCAGATGAACATCAATCATC TTCCTGCATCAGCAGATACCAGAAGACCTCATACTACAAAACTCCATCCCCTACCCCATCTCCTCATCTCCTTTCCAAACTCCGCAACTATGAACTTCTT CACAAGCGGTGCGAGCCTTTCTCCGAATCCTTCAACAAATCTTTTCAAAAATTTACATCCCACCGGTCGGAGTCAAAATCGTCCGATTGCAACTATGTGG TGTTCACGCTGCATTACAATGGTTTAGGCAACAGGATGCTCGGTCTTTCCTCTGCTTTCCTCTACGCACTGCTCACGAACCGGGTGCTTCTTGTCGATTT CGGTCCGGACATGGTCGATTTATTCTGCGAACCGGTTCGGAACTCGACCTGGCTTCTTCCTGTGGATTTTCCTTACAGGGATCAATTCCAGAGCAAGGAA TTCAAGGAAGCTCATAGCCTTGGTAGCTTGCTGAGGAACAATACCAATTTGACTCAGTTGGATCCTCCACCAACTATCCTTCATCTTTTACTTTCCTACG ATTTCGACTTCCATGACAAATTCTTCTACATGGATGATAATCAGGATTTTCTCAAGAAAGTCCCGTGGCTGATTCTGAAATCGGACCAGTATTTCGTGCC GTACCTTTTCCTGATGCCGATGTTCAGGCCGGAATTGGAGAGAATGTTTCCTGACGATAAGGACACAGTTTTCCACCACTTGGGGAATTACCTCTTTAAC CCTTCCAATCAAGCATGGGGATTGATCACGAGATTCTACGACGCTTACATGGCTAATTCGGAGCAGAGGATCGGCCTTCAGGTTAGGGTTCTCAACACTA CAAAAAGTCCAATCCCACTTGTCACCAAGCAGATTTTGCAGTGCACCCAGAAAGAAAAAATCCTGCCTAACTTACAAGACTCTCAGGATTATAAACCTGT CAGGAATATCGGTAACAACAAGAAAACATCGAAGGCTGTCCTGATTGGGTCGTTGTATCGAGAATTCTACGACGAATTGAAGCAAATGTTCTGGACGAGG CCAACTATCGATGGGGAGGTGATCGGGGTTCATCAGGCGAGTCATGAAGGTAGTCAGAAGTCTGAAAACCAGTCTCATAATATGAAGGCGTGGACTGAAA TATACTTGTTGAGTATGTCTGATGTTTTGGTGACTAGTCCGTGGTCTACTTTCGGGTATGTGGCTCAATCTCTTGGAGGGTTGACTCCATGGATGTTAAA CATTCTTGATGTCAACAACAATCGTGGTAAAGAGAAGCTGCCGGAACCGGCTTGTCGACGGGGGATTTCAATGGAGCCATGTTTTCATTTTCCTCCAAGC TATGACTATCAGAAACAAACTGTGCTTGATGATCATGAGGGACGTTTCGTTCCTATGCTTCATTGTGAAGAAGTGAGTTGGGGATTGAAACTTGTCAGTG AAAAGAAGTGA
AA sequence Show only first row Show all	>Lus10041642 pacid=23146732 polypeptide=Lus10041642 locus=Lus10041642.g ID=Lus10041642.BGIv1.0 annot-version=v1.0 MGTHEFTSSKFTVAIVAASMVMSIILIATIFFPNPFSDLAQKFSPSQKPITTSPTTTTRFSDEHQSSSCISRYQKTSYYKTPSPTPSPHLLSKLRNYELL HKRCEPFSESFNKSFQKFTSHRSESKSSDCNYVVFTLHYNGLGNRMLGLSSAFLYALLTNRVLLVDFGPDMVDLFCEPVRNSTWLLPVDFPYRDQFQSKE FKEAHSLGSLLRNNTNLTQLDPPPTILHLLLSYDFDFHDKFFYMDDNQDFLKKVPWLILKSDQYFVPYLFLMPMFRPELERMFPDDKDTVFHHLGNYLFN PSNQAWGLITRFYDAYMANSEQRIGLQVRVLNTTKSPIPLVTKQILQCTQKEKILPNLQDSQDYKPVRNIGNNKKTSKAVLIGSLYREFYDELKQMFWTR PTIDGEVIGVHQASHEGSQKSENQSHNMKAWTEIYLLSMSDVLVTSPWSTFGYVAQSLGGLTPWMLNILDVNNNRGKEKLPEPACRRGISMEPCFHFPPS YDYQKQTVLDDHEGRFVPMLHCEEVSWGLKLVSEKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041642 [exp]	0	1
AT1G14540			Peroxidase superfamily protein...		Lus10000003 [exp]	6.1	0.9552
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	10.0	0.9098
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	11.7	0.9218
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	12.0	0.9454
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	18.8	0.9436
AT1G17860			Kunitz family trypsin and prot...		Lus10007890 [exp]	19.7	0.9366
AT1G11410			S-locus lectin protein kinase ...		Lus10007609 [exp]	19.9	0.9287
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	22.7	0.8870
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	22.8	0.9372
AT5G39130			RmlC-like cupins superfamily p...		Lus10000622 [exp]	24.5	0.9246

Compare expression of checked genes

Lus10041642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.