Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37320 387 / 1e-129 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 371 / 2e-123 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37370 365 / 5e-121 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 360 / 3e-119 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37430 357 / 4e-118 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37400 356 / 1e-117 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT3G28740 356 / 2e-117 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT5G36220 353 / 1e-116 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37360 352 / 4e-116 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT5G57220 344 / 3e-113 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024078 [exp] 843 / 0 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024819 [exp] 449 / 9e-154 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024818 [exp] 437 / 9e-149 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10020437 [exp] 415 / 2e-140 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 412 / 4e-139 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024820 [exp] 406 / 1e-136 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024816 [exp] 383 / 7e-128 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 383 / 7e-128 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10027614 [exp] 364 / 1e-121 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021800 [exp] 455 / 3e-156 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.014G020500 [exp] 387 / 2e-129 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 385 / 5e-129 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Potri.007G049900 [exp] 383 / 5e-128 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 380 / 5e-127 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143800 [exp] 379 / 1e-126 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 379 / 3e-126 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.002G121400 [exp] 378 / 4e-126 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 377 / 5e-126 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 377 / 1e-125 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041643 pacid=23147071 polypeptide=Lus10041643 locus=Lus10041643.g ID=Lus10041643.BGIv1.0 annot-version=v1.0 ATGGCAGCTGGAGCATACTGGTTAATTCTTGGTCTTCTCACCTTCCTAGTTGCTAATCACCTCATTTCCAACCGTCGTCGAAACAACAACAGTAGAAACC TCCCGCCGTCCCCGCCTTCCCTCCCGATCATAGGTCACCTCCACTTACTCGCCGGCCAATCCCCTCATCGATCCCTCCGCAGCCTCTCATCAACCTATGG CGATGTCATGCTTCTCCAATTCGGGTCTCGCAAAGTCCTAGTGATCTCCTCTCCTCACCCAGTGGAGGAATGCTTCACCACAAACGACGTCGTCTTCGCC CATCGTCCCCAGTTGCTGGGCGGCAAGCACCTCAACTACAACTACTCCACCATCGGAGCTTGCAACTACGGCGACCGATGGCGCAAACTCCGTCGCCTCA CGACCTTGGAGCTCTTCTCCTCTTCTCGGGTGGCGGCTTATTCCGATTCCCGGCGGGAGGAGGCTGGGCTACTTCTGAAGGAGCTCTTGCTTCAGGAGGA AAAAGAAGGCCCAGTAGTGAATTTGAGTTCGAGATTCAGAGGGTTTGCTTTTAATACGATGTTGAGAATGGTGGCTGGGAAGCGGTATTTTGGGTACGGG GAATTGGATTCCGTGGGTGAAGAGGCGAAGGAGTTTCAGGATCTGATCGGCGAATACGTTGGGATTCAGGGAGCCTCTACTCCTAATGATTTCTTCTCCA TACTCCGATGGTTTGATTTCCAGGATTTGGAAAAGAGGATGAATCTTATCATGACCAAATTGGACCGTTTCTTGCAACATCTCCTTGATGAGTTTCGAGA AGCAGCAGAAGGCCCAAAACCCCAAACGACGCCCACCTTAATCGATGTCATGCTGTCGTTGCAACAATCGGAGCCTGAATTCTACACCGACGAGACTATC AAAGGTGTCATCCTGGTAATGCTTATCGCGGGCACTGAAACGTCATCGACAACGATGGAATGGGCAATGGCGTTGCTGCTTAAGAATCCAGAAGCAATGA AGAAAGTAGAAGCAGAGATAGAGCAGAATGTTGGGCTAGACCGTTTGCTGGAGGAAACAGATTTGTGCAAGTTGACTTATCTGCAAAATGTGATCGATGA GACCCTCCGGCTGTATCCACCCGTTCCATTGCTGATCGCACACGAATCGTGCGAGGCAACGAGGGTGTGTGGGTTTGATGTGCCGAAAGGAACAATGTTG CTCGTTAATGCTTGGTCTTTGCATAGGGATCCAGAGCTGTGGGAGGATCCAGAGAGGTTTTTGCCGGAGAGATTTGATCAGATCTGTGATCATGATGATG ACGGTGATGTTGATCAATCGACTAAGGTTAAGAAGAAGAACAAATACAGGCTAGTTCCGTTTGGGGAAGGGAGAAGGGCTTGCCCAGGGGATGTTCTTGG TAGGAAAGTCGTGGGGCTGGCTTTGGGTGCGGTGGTTCAGGCATTTAAGTTGAGTAAGATTGAAGGAGACAGGGAGATTGATATGGACGAGGGAACTGGG TTGACCATGTCCAGAGCTAACCCCTTGGAGGTTGTTTGTAAACCTCGTAGCAATGCAATTTCCGACATTCTCATGTCCACCACGTCCTAG
AA sequence Show only first row Show all	>Lus10041643 pacid=23147071 polypeptide=Lus10041643 locus=Lus10041643.g ID=Lus10041643.BGIv1.0 annot-version=v1.0 MAAGAYWLILGLLTFLVANHLISNRRRNNNSRNLPPSPPSLPIIGHLHLLAGQSPHRSLRSLSSTYGDVMLLQFGSRKVLVISSPHPVEECFTTNDVVFA HRPQLLGGKHLNYNYSTIGACNYGDRWRKLRRLTTLELFSSSRVAAYSDSRREEAGLLLKELLLQEEKEGPVVNLSSRFRGFAFNTMLRMVAGKRYFGYG ELDSVGEEAKEFQDLIGEYVGIQGASTPNDFFSILRWFDFQDLEKRMNLIMTKLDRFLQHLLDEFREAAEGPKPQTTPTLIDVMLSLQQSEPEFYTDETI KGVILVMLIAGTETSSTTMEWAMALLLKNPEAMKKVEAEIEQNVGLDRLLEETDLCKLTYLQNVIDETLRLYPPVPLLIAHESCEATRVCGFDVPKGTML LVNAWSLHRDPELWEDPERFLPERFDQICDHDDDGDVDQSTKVKKKNKYRLVPFGEGRRACPGDVLGRKVVGLALGAVVQAFKLSKIEGDREIDMDEGTG LTMSRANPLEVVCKPRSNAISDILMSTTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	0	1
AT1G70570			anthranilate phosphoribosyltra...		Lus10006201 [exp]	2.6	0.9319
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	3.2	0.9552
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	3.2	0.9299
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	4.7	0.9295
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	4.9	0.9415
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	6.0	0.9411
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	7.5	0.9397
AT5G24090		ATCHIA	chitinase A (.1)		Lus10039317 [exp]	8.5	0.9030
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	9.7	0.9333
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037785 [exp]	9.8	0.8973

Compare expression of checked genes

Lus10041643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.