Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03210 357 / 2e-117 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT2G03220 355 / 8e-117 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT1G14100 335 / 2e-109 FUT8 fucosyltransferase 8 (.1) AT1G14070 314 / 2e-101 FUT7 fucosyltransferase 7 (.1) AT1G14110 305 / 3e-98 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15390 305 / 1e-97 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 289 / 2e-91 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15350 284 / 1e-90 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14080 284 / 1e-89 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G74420 257 / 2e-79 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041645 [exp] 534 / 0 AT2G03220 315 / 2e-101 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 502 / 1e-174 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 502 / 3e-174 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 416 / 2e-140 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008693 [exp] 389 / 6e-133 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10026125 [exp] 389 / 1e-132 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10026128 [exp] 391 / 4e-131 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 354 / 2e-116 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10036776 [exp] 352 / 6e-115 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034100 [exp] 402 / 6e-135 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 397 / 3e-133 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 390 / 5e-130 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 382 / 9e-127 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 374 / 3e-122 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 369 / 1e-120 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 354 / 2e-115 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041644 pacid=23146911 polypeptide=Lus10041644 locus=Lus10041644.g ID=Lus10041644.BGIv1.0 annot-version=v1.0 ATGAGAAGAACGGTCAGATTGATGATCGGAAGAAAGGCAACGGAATTCATCACTTCTTCCAACAAGTTCAAATTCACCGTCGCCGTGTCCGCTTCCATCG CCGCCGCATCTCTTCTCCTCATCGCCTCCCTAGTTTCTCTTGACACTCAGTTCTCTCACGTCCCCTTTTCCCGGCCGCCGCTCAGAGCTAATAATAATTA CAACCCCTCATGCGTCAGCCGCCTCAAGAATTCTCACCGCCGATCAACCTCTCCCCTTCAGCCATCTCCGTACTTGCACCACAAGCTCCGACAATACGAA ATCCTCCACTCCCGCTGCGGCCCGCTGTCCGAATCCTTCAACTCATCGGACTGCAAATACGTCGTGTATGTTCCTTTCCGAGGGCTCGGAAACAGAATCC TAGCTCTCGCCTCTACTTTCCTGTACGCCTTGCTCACCAATCGGGTTCTTCTCGTCGATTTCGGCCCCGATATGAAACATCTCTTCTGCGAGCCGTTTCC GAATTCAACGTGGCTGCTGCCCGAAACTTTCCCCTTGAGAGACCAGTTCTACAAATCCATCTTTCGAGATGCTTATAGCTACGGGAATTTGCTAAAGCAG AGGGAAAGTCAACAACGGCAGCAGAATGTTTCTAATTCTGCCAATTCCACAGTACCGTCGCTTGTCCAATTGTATCTCGTCGACGATTACAACGACTACG ACAAGCTGTTTTTCAGAGACGAGAATCAAGGGTTTCTCCAAGGAGTGCCCTGGCTGATCCTGATTTCCACCGGATACTTCGTTCCCCCAATTTTCCAGAT GCAGTCTTACAGATCAGAATTGGAAAGATTGTTTCCGGATGACGACGACGTAGAGACTGTTTTCCACCACTTGGGGAATTACCTCTTCAACCCTTCCGAT CAAGCGTGGAGGATCATCTCAGGATTCTACGAAGCTCACTTAGCCAAAGCAGAGGAGAGAATTGGGTTTCAGGTTAGAGTTTTCGAGCCGAAGAACACCC CACCTCCCCTCGTCATGAAACAGATCCTATCCTGTACAGAAAATCAAAAAATCCTGCTGGCATCCTCATCATCCTCAAAAGCAATCCTGATAGCATCCTT ATCAAGCAAATTCTACGAGGATATGAAGTTCAAGTACGAGGGGAACAGTGGTATCGGAGTTTACCGGGCGAGTCACGAAAAGAAGCAGCGATTCGGGGAC GATTCACACAATATGAAGGCGTGGGTGGATATGTATCTGCTGAGCATGAGCGATGTTTTGGTGACGAGTAGTATGTCTACGTTTGGGTATGTGGCTGGTG GGCTTGGTGGGATAAGGCCATGGATTGTTATGTTTCCTAGTCGTTTCGTGAAGAACGAGACTGAGCTTCCGAAGCCGGCTTGCGAAAGGGCGGTGAATAT CGAGCCGTGTCTCCATGTGCCACCATGGTTTGCTTATCCTGATCAGCCTGGAACTGTTGGTCCAGTTATTCGTTGTGAAGACGTGCCATGGGGACTCAAG CTTGCCGCTGGACACTACAACCGAACATCTAGGTAG
AA sequence Show only first row Show all	>Lus10041644 pacid=23146911 polypeptide=Lus10041644 locus=Lus10041644.g ID=Lus10041644.BGIv1.0 annot-version=v1.0 MRRTVRLMIGRKATEFITSSNKFKFTVAVSASIAAASLLLIASLVSLDTQFSHVPFSRPPLRANNNYNPSCVSRLKNSHRRSTSPLQPSPYLHHKLRQYE ILHSRCGPLSESFNSSDCKYVVYVPFRGLGNRILALASTFLYALLTNRVLLVDFGPDMKHLFCEPFPNSTWLLPETFPLRDQFYKSIFRDAYSYGNLLKQ RESQQRQQNVSNSANSTVPSLVQLYLVDDYNDYDKLFFRDENQGFLQGVPWLILISTGYFVPPIFQMQSYRSELERLFPDDDDVETVFHHLGNYLFNPSD QAWRIISGFYEAHLAKAEERIGFQVRVFEPKNTPPPLVMKQILSCTENQKILLASSSSSKAILIASLSSKFYEDMKFKYEGNSGIGVYRASHEKKQRFGD DSHNMKAWVDMYLLSMSDVLVTSSMSTFGYVAGGLGGIRPWIVMFPSRFVKNETELPKPACERAVNIEPCLHVPPWFAYPDQPGTVGPVIRCEDVPWGLK LAAGHYNRTSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041644 [exp]	0	1
AT1G53050			Protein kinase superfamily pro...		Lus10018601 [exp]	3.7	0.9656
					Lus10012705 [exp]	9.0	0.9483
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	11.0	0.9637
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	14.5	0.9521
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	15.1	0.9532
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	16.9	0.9631
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	17.9	0.9558
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	19.8	0.9632
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	21.5	0.9504
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	21.9	0.9417

Compare expression of checked genes

Lus10041644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.