Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 314 / 4e-101 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 313 / 6e-101 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14100 303 / 2e-97 FUT8 fucosyltransferase 8 (.1) AT2G15390 300 / 3e-96 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15350 291 / 1e-93 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14070 291 / 1e-92 FUT7 fucosyltransferase 7 (.1) AT1G14110 286 / 2e-91 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15370 286 / 1e-90 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G14080 277 / 2e-87 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G74420 231 / 1e-69 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012571 [exp] 565 / 0 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 545 / 0 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 473 / 2e-163 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008693 [exp] 392 / 3e-134 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10026125 [exp] 389 / 5e-133 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10041642 [exp] 389 / 3e-130 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026128 [exp] 388 / 3e-130 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 354 / 2e-116 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 344 / 3e-113 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034100 [exp] 372 / 7e-124 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 362 / 1e-119 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 355 / 6e-117 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 353 / 7e-115 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 342 / 2e-110 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 335 / 5e-109 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 335 / 2e-108 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041645 pacid=23146627 polypeptide=Lus10041645 locus=Lus10041645.g ID=Lus10041645.BGIv1.0 annot-version=v1.0 ATGTCTTCCCACAGGTTCAAATTCAAGGCTGTGGCAGCTCTTCTACTCGTAATCTCCTCCCTAGTTTACACAAACATCCAATTCCCTAACCACCTTCGCT TGAAATCCGACGGCGCTTATCGGACGCTCAGAGTTTACAATCCGTCATGTAACAGCCGCCAGCAGGGCCACAGGAACTCCTACAACAGAAGAACCCTTGA CCCGTCTCCTTACTTCCGTTCCAAGCTACGACAATACGAGAATCTCCACTCCCGCTGCGGTCCACTATCACAAGCACCCTTCATTAATCCAACAACGGCT CAGAGTACTGACTACTGTAAATACTTAGTGTACACACCTTCGAAAGGGCTCGGCAACAGAATGATTAGCCTAGTATCAACTTTCCTCTACGCCCTGCTCA CCGATCGGGTTCTTCTTGTCGATTTCGGTCCCCACATGGAGCATCTCTTCTGCGAGCCGTTCCCAAATTCGACATGGTTCTTCCCTGAAACGTTCCCCTT GAAATCATATCAGTTCTATACACCCCATTTCCGGGAGGTTTATAGCTACGGGAACCTTCTGAGGAAGAAAGATCAAGAAATGTTGAATTCGACACCATCA CTCGTCCAAATTTTTCTCCACGACACGTACGACGACTATGACAAGCTGTTCTTCAAAGACGAGAAGCAGGAATTTCTGAAGGGGGTTCCATGGCTGGTTC TGATTTCAACTCAGTATTTTGTCCCCTGCATCTTCCAGATGCACACCTTCCGTGCACAACTGGAGAAGTGGTTCCCTGGTGACCAAGTAGAGAATGTTTT CTACCATTTGGGGAATTACCTCTTCAACCCTTCCGATCAAGCATGGGAGCTCATCGCAACATTTTATCAATCTCACTTGGCGAAAGCAGAGGAGAGAATA GGGTTTCAGGTTAGAGTTTTCAGGCCAGAGAAGACCCCACCTTCCCTCGTTATGAAACGAATCTTGCTGTGCACACAAATGAAGAAATTAGGCCACGAAA ATCGGACATCAGCGATCCTAGTAGCATCCTTATCAAGCAAATTCTACAAGGAGATGAAGTCATTGTTTGAAGGTGGTGAGAATGTTCAAGTTTATCAGGC GAGTCATGAAGTGAAGCAGAAACACGATGACGATTTGCACAATATGAAGGCGTGGGTGGATATGTACCTTCTGAGTATGAGCGATGTTTTGGTGACAAGT AGTATGTCTACGTTCGGGTATGTGGCTGCGGGGCTTGGCGGGATAAGGCCATGGATTCTTATGATTTCTCCTCCTACGGATTGGAAGGGCAACTATGATC AGATCATGCACATTCCGGAGGCCGGGTGTGAAAGGGCGGTGAATTCGGAGCCTTGTTTTCATAACCCGCCATGGTTTGCCAATCCTGATGATCATCAGAG AGTCGGGCGTTGTGAAGATGTGCCTTGGGCAGGACTCAAGCTTGTTAGTACTAGTTACTAG
AA sequence Show only first row Show all	>Lus10041645 pacid=23146627 polypeptide=Lus10041645 locus=Lus10041645.g ID=Lus10041645.BGIv1.0 annot-version=v1.0 MSSHRFKFKAVAALLLVISSLVYTNIQFPNHLRLKSDGAYRTLRVYNPSCNSRQQGHRNSYNRRTLDPSPYFRSKLRQYENLHSRCGPLSQAPFINPTTA QSTDYCKYLVYTPSKGLGNRMISLVSTFLYALLTDRVLLVDFGPHMEHLFCEPFPNSTWFFPETFPLKSYQFYTPHFREVYSYGNLLRKKDQEMLNSTPS LVQIFLHDTYDDYDKLFFKDEKQEFLKGVPWLVLISTQYFVPCIFQMHTFRAQLEKWFPGDQVENVFYHLGNYLFNPSDQAWELIATFYQSHLAKAEERI GFQVRVFRPEKTPPSLVMKRILLCTQMKKLGHENRTSAILVASLSSKFYKEMKSLFEGGENVQVYQASHEVKQKHDDDLHNMKAWVDMYLLSMSDVLVTS SMSTFGYVAAGLGGIRPWILMISPPTDWKGNYDQIMHIPEAGCERAVNSEPCFHNPPWFANPDDHQRVGRCEDVPWAGLKLVSTSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041645 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	13.7	0.8876
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	26.4	0.8829
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	29.8	0.8812
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	35.7	0.8674
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	37.2	0.8843
					Lus10016424 [exp]	39.2	0.8479
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	41.2	0.8671
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012009 [exp]	42.0	0.8424
AT4G16850			unknown protein		Lus10015507 [exp]	45.8	0.8736
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	47.6	0.8497

Compare expression of checked genes

Lus10041645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.