Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 915 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G17420 746 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 740 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 726 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 662 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 618 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002547 [exp] 1306 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 1172 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031810 [exp] 1077 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 1061 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 974 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 954 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 860 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 806 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10013151 [exp] 751 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G046200 [exp] 1091 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 1088 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 1075 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 1047 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 993 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.008G178000 [exp] 775 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G057100 [exp] 774 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 738 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.013G022000 [exp] 644 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 636 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10041646 pacid=23146769 polypeptide=Lus10041646 locus=Lus10041646.g ID=Lus10041646.BGIv1.0 annot-version=v1.0 ATGCAGAGCATTATGGTACAGGGGTCGGTTTGTGGGCCAACTGCTGGGTTGAACTGGGCAGCACTAATCAACCGAGGCGTTGGGATGTTTAATAATAATA ATAAGTTGGCGGTGCAGGGTTGGAAATCTGGTCGGGTTTTAGGGAAGGCGGGGAGAGTAATGAAGGTAGAGGCAATATTCGGGTTGATGAACCCGATGGC ACTAGTGACGAGCAAAGTGAAGGCAGTTGTGACGGTTGAGCAGACCATTGGTGGGTTCGTGGCTAACACCGTGCTTGTAACCAACACCTTGACTGACCTG CTCGGCACATCTCTGGATTTGGAGCTTCTTTCTGCCGATCTCGACCCTAAGACTGGAAAGGAGAAGCCGAGTGTAAGATCGTTAGGCCAATATTCCGGCG CAAATGGGTTACAGATCAAGTACCAAGCCTCATTCGCCGTTCCGGCCGATTTTGGGCCGGTGGGAGCCATCCGTGTCGGAAATTTGCATACCAGAGAGAT GTTCATCAAGGACATCGTCATAACGGGCCTCCCCGACGGCACCACCGTCAACATCGAGTGCCAGTCCTGGGTTCATCCCTCCATCTCCGGCAAGCCCAAA CGGGTCTTCTTCACCACCAAGTCATACTTGCCATCTGATACACCATCCGGATTGAGGAAGATGCGGGCTATGGAGCTTGTGGCCTTGCGTGGGAGTGGTC AAGGTGAGAGGCAAAAAGGTGACAGGATATATGACTACGACGTTTACAATGATCTGGGCGATCCTGATAAAAGTGACGATTTGAAGAGACCTGTATTGGG TGGCAAAGAGCGTCCTTATCCCAGGCGCTGCCGAACAGGACGACCCCGCTCATTCAAAGATCCACAGTCAGAGATCAGGCCCGCTAGTACCTTGATCGGT AACGTGGGAAGCAAGGTACTGGGGTTCAGTAGCTTCTACGTGCCCCGGGATGAAGAGTTCTCTGAAATTAAGCAGGCAAACTTCTCCGTCAAGAGACTCT TCTCGCTTTTGCATTCCTTGTTGCCCATCCTGGAAACCGTTTTTATCGACCCTGCCCTTGGATTCCCGCACTTTACAGCCATCAATAAGATGTTCGACCA AGGACTCAACTTGCCTCCCGTTTCCTCAGCCAATCTAAAAGCCGTCATCCCAACTCTTATCAGGAATACTGCTGAAGCAAGTGATGACATATTGCAGTTT GAGGTCCCTCCAACAATGGAAAGAAACAGCTTTTTTTGGTTCACTGATGAAGAATTTGCTCGGCAAACCCTTGCTGGATTGAATCCGTGTACCATACAGT TGATAAAGGAGTGGCCCCTAAAGAGCAACCTAGACCCTGCCATTTATGGTCCACAAGAGTCTGCAATCACGAAAGAAATGATCGAGAAAGGAATTAGAGG CTTTACAACGCTGGATGAGGCCATCAAGCAAAAGAAGCTTTTCATGCTTGACTACCATGATATCTTCTTGCCGTTAGTTGGTAAAGCTAGAGAGCAAGAG GGCACGACACTATACGGGTCTCGAACGATCTTTTTCCTCTCCCCTTCTGGCTCATTGATGCCCATAGCAATCGAACTTACTCGACCACAATTGGATGGAA AGCCACAATGGAAACAAGTATATTCACCTTATTATTCTAATGCTACAGATGTCTGGTTATGGAGACTTGCCAAAAGTCACGTCCTTGCTCATGATTCTGC CTATCACCAACTCATTAGTCATTGGTTGAGGACTCATGCTTGCACTGAACCATACATAATTGCAGCTAGACGCCAGCTTAGTGCAATGCATCCAATCCAC AGACTCTTGAAGCCTCACTTCAAGTACACGATGGAAATCAATTCGCTAGCACGAGAAGGCCTGATCAACGCTGGCGGAGTTATTGAGGAGAATTTCTCTA TTCTCAAGCACACCATGGTGGCTAGCTCTGCTGTATATGACAAAGTGTGGCGATTCGACTATGAGGTTCTTCCTAAGGATCTAATTAACCGTGGAATGGC AGTGGAGGATCCGTCTGCTCCACACGGTCTAAAGCTAACCATCGAAGACTACCCCTATGCTAATGATGGTCTGTTGGTATGGGATTCCATCAAACAATGG GTCACTGATTACGTCAACCATTACTACGCAGATCCGAGGCACGTAGCTTCGGATACCGAACTTCAAGAGTGGTGGAGCGAAGTTCGTAACCAAGGCCACG CGGACAAAAAGGACGAACCATGGTGGCCGAGTCTGAAGACCCCGGAAGACCTTGTTCAGGTGGTCACAACTATAATATGGGTCGCCTCGGGACACCACGC GGCCGTCAACTTCGGGCAGTATGCCTACGGGGGATACTTCCCGAACCAGCCGACCATAAGCAGGCTGAAAATGCCGGACGAAGATCCAACCGCGGCGGAA TGGGATGTGTTCATGAAGAAACCCGAAACGGTTCTTCTTACAACGTTCCCTTCCCAGATTCAAGCGGCCAAGGTTGTGCTTGTGCTGGACGTGCTATCGA CCCATTCTCCCGATGAAGAGTATCTGGGGCAGAACATCGAGCCGGCGTGGGCTGATGAGCCGAACATCAAGACTGCTTTTGAGAAGTTCAGCGGCAGGAT GTCAGAGATCGAGGGGGAAATTGACGTGAGGAATGCAGACGTTTCGAGGGTGAATAGGAGTGGAGCTGGCATCTATCCTTATGAGCTTCTGAAACCTTTC TCTGAGGATGGTGTTACTGGAAAGGGTGTTCCTTGCAGCATTTCCATATAG
AA sequence Show only first row Show all	>Lus10041646 pacid=23146769 polypeptide=Lus10041646 locus=Lus10041646.g ID=Lus10041646.BGIv1.0 annot-version=v1.0 MQSIMVQGSVCGPTAGLNWAALINRGVGMFNNNNKLAVQGWKSGRVLGKAGRVMKVEAIFGLMNPMALVTSKVKAVVTVEQTIGGFVANTVLVTNTLTDL LGTSLDLELLSADLDPKTGKEKPSVRSLGQYSGANGLQIKYQASFAVPADFGPVGAIRVGNLHTREMFIKDIVITGLPDGTTVNIECQSWVHPSISGKPK RVFFTTKSYLPSDTPSGLRKMRAMELVALRGSGQGERQKGDRIYDYDVYNDLGDPDKSDDLKRPVLGGKERPYPRRCRTGRPRSFKDPQSEIRPASTLIG NVGSKVLGFSSFYVPRDEEFSEIKQANFSVKRLFSLLHSLLPILETVFIDPALGFPHFTAINKMFDQGLNLPPVSSANLKAVIPTLIRNTAEASDDILQF EVPPTMERNSFFWFTDEEFARQTLAGLNPCTIQLIKEWPLKSNLDPAIYGPQESAITKEMIEKGIRGFTTLDEAIKQKKLFMLDYHDIFLPLVGKAREQE GTTLYGSRTIFFLSPSGSLMPIAIELTRPQLDGKPQWKQVYSPYYSNATDVWLWRLAKSHVLAHDSAYHQLISHWLRTHACTEPYIIAARRQLSAMHPIH RLLKPHFKYTMEINSLAREGLINAGGVIEENFSILKHTMVASSAVYDKVWRFDYEVLPKDLINRGMAVEDPSAPHGLKLTIEDYPYANDGLLVWDSIKQW VTDYVNHYYADPRHVASDTELQEWWSEVRNQGHADKKDEPWWPSLKTPEDLVQVVTTIIWVASGHHAAVNFGQYAYGGYFPNQPTISRLKMPDEDPTAAE WDVFMKKPETVLLTTFPSQIQAAKVVLVLDVLSTHSPDEEYLGQNIEPAWADEPNIKTAFEKFSGRMSEIEGEIDVRNADVSRVNRSGAGIYPYELLKPF SEDGVTGKGVPCSISI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	0	1
AT2G31600			unknown protein		Lus10003417 [exp]	6.6	0.8393
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10012737 [exp]	10.5	0.8794
AT3G28700			Protein of unknown function (D...		Lus10007271 [exp]	16.6	0.8267
AT2G31600			unknown protein		Lus10026896 [exp]	20.1	0.8344
AT2G01080			Late embryogenesis abundant (L...		Lus10005728 [exp]	20.2	0.8507
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10017530 [exp]	21.6	0.8296
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	23.0	0.8071
					Lus10033677 [exp]	29.1	0.8265
AT3G55640			Mitochondrial substrate carrie...		Lus10040257 [exp]	32.6	0.8107
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	37.6	0.8518

Compare expression of checked genes

Lus10041646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.