Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12750 327 / 2e-110 ZIP1 zinc transporter 1 precursor (.1) AT1G05300 313 / 5e-105 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 298 / 3e-99 ZIP3 zinc transporter 3 precursor (.1) AT1G31260 282 / 8e-93 ZIP10 zinc transporter 10 precursor (.1) AT5G62160 275 / 3e-90 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT4G19680 260 / 2e-84 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT1G10970 261 / 4e-84 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT4G19690 259 / 5e-84 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT2G04032 255 / 2e-82 ZIP7 zinc transporter 7 precursor (.1) AT4G33020 206 / 1e-63 ATZIP9, ZIP9 ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041613 [exp] 613 / 0 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10024107 [exp] 580 / 0 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10040615 [exp] 290 / 4e-96 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10006935 [exp] 269 / 6e-88 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014062 [exp] 266 / 9e-87 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10014063 [exp] 239 / 2e-76 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10019854 [exp] 221 / 2e-70 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10031307 [exp] 122 / 3e-33 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10031099 [exp] 108 / 1e-28 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006800 [exp] 403 / 2e-140 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 400 / 1e-139 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G173300 [exp] 358 / 1e-122 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 347 / 1e-118 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 318 / 4e-107 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G134300 [exp] 313 / 3e-105 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.015G117900 [exp] 297 / 6e-99 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 290 / 1e-96 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.010G135400 [exp] 267 / 3e-87 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1) Potri.006G006900 [exp] 199 / 8e-63 AT1G05300 187 / 2e-58 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10041647 pacid=23146858 polypeptide=Lus10041647 locus=Lus10041647.g ID=Lus10041647.BGIv1.0 annot-version=v1.0 ATGAATCAGCGGCGGCATTTCTGTTCCGTTTTGTTTGTCCTCATCCTCCTTGTGATCCCGTCGACACTCGTGTTGGGGGACTGCACGTGTGACGCTAGCG ACGAGGACTCCGACAAAGACCGTGCGGCGGCGCTGAGGTACAAGTTGGCAGCAATCGTGTCGATCCTGGTGGCGGGAGCGGTGGGAGTGTGCTTGCCGGT GTTGGGCCAGAAAGCGATCCCTACTCTGCACCCTGATAACAACGTCTTCTTCATAGTGAAGGCGTTCGCGGCAGGGGTCATACTCTCCACTGGTTTTATC CACGTTCTTCCCGACGCTTTCGAGAACCTCACCTCGCCGTGCCTCGACGAAAACCCCTGGGGTAAATTTCCCTTTGCAGGGTTTATCGCCATGGTTGCGG CCGTGGGGACTCTAGCCATCGATTCCTTTGCCACTTCCTACTATACCAGGTCGCATAATAAGGGTTCAGCTCTGTCGCCAGAGAGGATCACAGATGAAGA GAAGGACGGTGGGCACGTGCAGGTCCACACCCACGCCACTCACGGCCCCTCTCAGCAGGTCCACACCCACGCCACTCACGGCCACTCTCACGGCGCTGTT TTCGCTGCTGGCGACGAGGGTCAAGTGCTAATTCGCCACAGAGTTATCTCCCAGGTATTGGAGGTGGGAATAGTGGTACACTCAGTGATCATAGGCATAT CATTGGGAGCATCTGAAAGTCCCAAAACAATTCGTCCTCTGGTTGCTGCTCTGTCTTTTCATCAATTCTTTGAAGGAATGGGACTTGGAGGCTGCATTTC TCAGGCGAAGTTCAAGTCGAGAGTTGTGGCGGTGATGGCCTTCTTCTTTTCGCTAACAACTCCTCTGGGAATTGCAATTGGATTTGGGATATCGAACGTG TACAAGGAGAACAGTCCAACTGCTCTGATAGTGGTAGGGACATTCAATTCAGCGTCAGCTGGTATTTTGGTATACTTAGCATTGGTGGATCTTTTGGCTG CAGATTTCATGAACCCTAAAGTACAGTCCAGTGGACGGCTTCAAATTGGCGTCCACATCGCTCTTCTGTTGGGCGCTGGGTTCATGTCTTTGCTCGCCAT TTGGGCTTAG
AA sequence Show only first row Show all	>Lus10041647 pacid=23146858 polypeptide=Lus10041647 locus=Lus10041647.g ID=Lus10041647.BGIv1.0 annot-version=v1.0 MNQRRHFCSVLFVLILLVIPSTLVLGDCTCDASDEDSDKDRAAALRYKLAAIVSILVAGAVGVCLPVLGQKAIPTLHPDNNVFFIVKAFAAGVILSTGFI HVLPDAFENLTSPCLDENPWGKFPFAGFIAMVAAVGTLAIDSFATSYYTRSHNKGSALSPERITDEEKDGGHVQVHTHATHGPSQQVHTHATHGHSHGAV FAAGDEGQVLIRHRVISQVLEVGIVVHSVIIGISLGASESPKTIRPLVAALSFHQFFEGMGLGGCISQAKFKSRVVAVMAFFFSLTTPLGIAIGFGISNV YKENSPTALIVVGTFNSASAGILVYLALVDLLAADFMNPKVQSSGRLQIGVHIALLLGAGFMSLLAIWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041647 [exp]	0	1
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	1.7	0.7939
AT5G10695			unknown protein		Lus10026229 [exp]	9.5	0.7276
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	12.2	0.7593
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	19.6	0.7583
AT5G20790			unknown protein		Lus10007378 [exp]	20.4	0.7112
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10040112 [exp]	24.2	0.5912
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	29.7	0.6993
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025325 [exp]	30.1	0.7513
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	40.4	0.7099
AT3G01400			ARM repeat superfamily protein...		Lus10018685 [exp]	53.1	0.7035

Compare expression of checked genes

Lus10041647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.