Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80630 464 / 4e-158 RNI-like superfamily protein (.1) AT3G58530 81 / 2e-16 RNI-like superfamily protein (.1) AT4G15475 82 / 3e-16 F-box/RNI-like superfamily protein (.1) AT5G01720 79 / 4e-15 RNI-like superfamily protein (.1) AT5G25350 74 / 9e-14 EBF2 EIN3-binding F box protein 2 (.1) AT5G27920 74 / 2e-13 F-box family protein (.1) AT2G25490 72 / 6e-13 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 69 / 4e-12 RNI-like superfamily protein (.1) AT4G33210 65 / 1e-10 SLOMO SLOW MOTION, F-box family protein (.1) AT1G77000 63 / 2e-10 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024070 [exp] 779 / 0 AT1G80630 373 / 7e-124 RNI-like superfamily protein (.1) Lus10012214 [exp] 91 / 8e-19 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10001264 [exp] 90 / 1e-18 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 88 / 3e-18 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10040998 [exp] 87 / 6e-18 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 84 / 5e-17 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 81 / 1e-15 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10012294 [exp] 79 / 1e-15 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10030102 [exp] 77 / 1e-14 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179100 [exp] 665 / 0 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 87 / 1e-17 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 82 / 3e-16 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 80 / 1e-15 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 79 / 5e-15 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 79 / 5e-15 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G022600 [exp] 76 / 3e-14 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.018G027700 [exp] 74 / 1e-13 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 72 / 2e-13 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 71 / 7e-13 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041648 pacid=23147057 polypeptide=Lus10041648 locus=Lus10041648.g ID=Lus10041648.BGIv1.0 annot-version=v1.0 ATGGCGGTAACAAAGCCAGCTGAATTGCCTCGGGAGTGCTGGGAATTGATTGCCAATTCCCTCGATCAGAATCGATACTTCGAGTCCCTCTCCCTCGTCT CAACCCAATTCTTGTCCGCCACCGATCACCTTCGCCGTTCCCTCACGATCACTTCCCGAACAGCCCCGTCCTTGTCTCTTCTTCTCCGGCGATTCCCTAA TGTCAGAGAGATCAAGATCAGGGAATTTCACGGTGACCTCGATTCCCTTCTTTGTCAAATCTCGGATTCTTCATTGAAACTTGAATCACTCGACATCTCT GGTCAATGCTACTTCCCTTCCAAGGGACTGGCCGTGTTGGGCCATAGGATGAGGAATCTGAAGGAATTGAATTGCTCCAGAATTTGTGGCTTGGAAAATG CCGATCTGTGTGTAATTGGCAACTCCTTTCCTTCTGTCGAGAATCTCGATATCAGCTTCCCTCAGTACAACTCGCGTTTCAACCCCAATGGATCGTTGGA TTTGCAGTACTTTGTGGCCTTCGTCACTGACGAAGGTATTGCTGATTTGTCATTGAAGCTGAGCAACTTGCAGAAGATCGACATTTCTGGTAATCAGTTC ATTACGGATAAATCACTTTCCTCTCTGTCGTTTAATTGCTCCTCCTTGGTGGAAATAATTCTGCTTGATTGCGATTTTATAACCCAGAATGGAATTGGGT TGACTCTCCGAAATGTTGTAAACTTGACGTCGGTAGCGATGGATGGAATTGGAATCCCTTCTCTGGATTCGTCTCTCAAGGAATCCTTTGTCGATGCGAA AAACATGAGTGCACTTCATCTGTCAAACTCGTTTTTATCGGATGAATTTCTCAGTATGATTGCAGATGCAAATCTTCCAATTCGGGACTTAACCGTCTCC CATTGTTATAATTTCACTTCTGTTGGGGTTGAAATGCTGTTGCACAGATATAGGTCTCTAGTGTATTTGGATCTTGAAGGAGCAAATTTTCTCACTGACG ACTCCATGATTGAGTTATCCAACTTCCTTCCAAATTTGACTTTCATAGATCTAGGCCTATGTTCTAAGCTCACGGGGCTTACCTTCTTTACTCTGATGAA TAACTGTCCATTGCTTGAAGATGTTAGAATGGAGAGCACAAACATTGGGGTGGAAGAGTTCACGGGATTGGCTGTGAAGAAATCCAAAATCAAGTTCCTG GATTTGGCTGGCAATAATAGCTTAAGTGATGAATGCCTCAAAAGGGTTGCATCCGGTTGTCCGAATCTAGAAGTGCTCAATCTCAGTTATTGTCCAAACA TCACCGAAGATGGAGTTACCGAAGTTTTGAGGAAATGTATTCGACTGAGGCACCTGGAGATCAGCAGATGTGTGGGAATTGCAAGCTTTACCATTGATTT CGAACTTCCTACGTTGGAGGTATTGAAAGCCCAGGGATCCATATTAGACGATGAAGCATTGGGAACAATTGCAGAGAGGTGTAAAGGGATTCTACGTTTA GACTTGGAATCTTGTTTGAGCGTGTCGAAACAAGGTTTAGCTCGTGTGGTGGAAAATTGCAGGAGATTGAGGGAGATAAACCTGAGGAGTTGTGAGAATG TGGATATCCATGCTATTGCATTGATGGCATTCAGAAGGCCATCGTTGAGGAAAATAATTCCTCCCGGTGAGAATATGTTCACAGAGAAGCAGATTAAGCT TTTCCTACGTCATGGATGTTCAGTTTCTGAAAGCTAG
AA sequence Show only first row Show all	>Lus10041648 pacid=23147057 polypeptide=Lus10041648 locus=Lus10041648.g ID=Lus10041648.BGIv1.0 annot-version=v1.0 MAVTKPAELPRECWELIANSLDQNRYFESLSLVSTQFLSATDHLRRSLTITSRTAPSLSLLLRRFPNVREIKIREFHGDLDSLLCQISDSSLKLESLDIS GQCYFPSKGLAVLGHRMRNLKELNCSRICGLENADLCVIGNSFPSVENLDISFPQYNSRFNPNGSLDLQYFVAFVTDEGIADLSLKLSNLQKIDISGNQF ITDKSLSSLSFNCSSLVEIILLDCDFITQNGIGLTLRNVVNLTSVAMDGIGIPSLDSSLKESFVDAKNMSALHLSNSFLSDEFLSMIADANLPIRDLTVS HCYNFTSVGVEMLLHRYRSLVYLDLEGANFLTDDSMIELSNFLPNLTFIDLGLCSKLTGLTFFTLMNNCPLLEDVRMESTNIGVEEFTGLAVKKSKIKFL DLAGNNSLSDECLKRVASGCPNLEVLNLSYCPNITEDGVTEVLRKCIRLRHLEISRCVGIASFTIDFELPTLEVLKAQGSILDDEALGTIAERCKGILRL DLESCLSVSKQGLARVVENCRRLREINLRSCENVDIHAIALMAFRRPSLRKIIPPGENMFTEKQIKLFLRHGCSVSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	0	1
AT1G56150			SAUR-like auxin-responsive pro...		Lus10031178 [exp]	2.4	0.7424
AT4G18230			unknown protein		Lus10024587 [exp]	3.2	0.7391
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	4.9	0.7649
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	6.0	0.7087
AT1G22730			MA3 domain-containing protein ...		Lus10012205 [exp]	9.5	0.7118
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	9.6	0.7424
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	10.2	0.7271
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	15.2	0.7464
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	26.4	0.6840
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	31.0	0.6743

Compare expression of checked genes

Lus10041648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.