Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31730 116 / 3e-32 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 114 / 3e-31 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G19500 101 / 2e-25 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 101 / 2e-24 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 93 / 2e-21 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 91 / 8e-21 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G27660 88 / 1e-19 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 86 / 6e-19 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 85 / 9e-19 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G21340 83 / 3e-18 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024071 [exp] 214 / 9e-71 AT2G31730 116 / 3e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 120 / 1e-33 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 119 / 3e-33 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 105 / 2e-26 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 100 / 2e-24 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 99 / 9e-24 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10010638 [exp] 97 / 1e-22 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 95 / 1e-21 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 86 / 1e-18 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G112000 [exp] 120 / 7e-34 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.013G126800 [exp] 117 / 1e-32 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G094300 [exp] 107 / 2e-27 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 102 / 1e-24 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 99 / 3e-24 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 98 / 4e-23 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 98 / 7e-23 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G032400 [exp] 97 / 9e-23 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G033000 [exp] 97 / 1e-22 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G129500 [exp] 96 / 2e-22 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041649 pacid=23146881 polypeptide=Lus10041649 locus=Lus10041649.g ID=Lus10041649.BGIv1.0 annot-version=v1.0 ATGGCGTTTGCTAGTAATGGGAAACCTTCAGTAGTGATGGTGATGGTAATGGTGATGAGCATGCTGGTCATAGCAGCAGCAGCAGCGAGCGAGATCGGAG TGAAGTGCAACCACAAATCAGTAGCGAATAACAATGCTGTGGCGGCGAGCATAGCCAGAGGCATCCTTAAAATGGTAAACGAGACTCCAAACAGCTCGAA TCTACGGACAGACATCACAGGTGAAATACACGCCACCAGATTTGAACTTGTTCTTCATCTGGGAAAGCTTGCCATGCTTGCCTGCTCGGGATTGTGGATG CTCCGAGACTTTCATCCAAATCCAATTCATCAACAACACTCCATTAACGCAATCCACGGAGAGAGAGAGCCCTCAAATAGCGGGAGGTGCAAATTTCCAA ATCCAAACGGGGCCCACATCACAGTGGATGTAAATTTACAAGCACCAGTAAGCAACAAGATGTTGAAAAACAAGCGACCATCCTCCACAAGCTCCTTCCG CCACACCAAACGGATGAAGTCCGACGACCACCATCCAAACTCTAGGAAAGACAAACAGCTCGGGGATCGGATCGTGGGACTACAGCAGCTTGTTTCTCCA TATGGAAAGACCGATACTGCCACTGTTCTTCAAGAAGCCATCGACTACATCTCCTTCCTTCATCAGCAGCTTAAGGTGTTAAGCTCCCCTTATCTCCTCT TCTCCTCTGCAACCATCAACAATGGTGGCATTGAGATCTCTACAGGTGCGCTCCAAAGCAGAGGCCTCTGTCTTGTCCCGCTGGATGCCACCGCTGTTAT TGATCATGGCGCAAATGGAGCGGATCTCTGGGCTCCAACCACCACTACTTAA
AA sequence Show only first row Show all	>Lus10041649 pacid=23146881 polypeptide=Lus10041649 locus=Lus10041649.g ID=Lus10041649.BGIv1.0 annot-version=v1.0 MAFASNGKPSVVMVMVMVMSMLVIAAAAASEIGVKCNHKSVANNNAVAASIARGILKMVNETPNSSNLRTDITGEIHATRFELVLHLGKLAMLACSGLWM LRDFHPNPIHQQHSINAIHGEREPSNSGRCKFPNPNGAHITVDVNLQAPVSNKMLKNKRPSSTSSFRHTKRMKSDDHHPNSRKDKQLGDRIVGLQQLVSP YGKTDTATVLQEAIDYISFLHQQLKVLSSPYLLFSSATINNGGIEISTGALQSRGLCLVPLDATAVIDHGANGADLWAPTTTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	0	1
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	1.0	0.9615
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	1.7	0.9489
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	2.0	0.9527
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	2.4	0.9433
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	3.5	0.9443
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	5.0	0.9435
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	5.3	0.9427
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	5.5	0.9364
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	5.7	0.9345
					Lus10039025 [exp]	6.0	0.9403

Compare expression of checked genes

Lus10041649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.