Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48020 86 / 3e-21 ATPMEI1 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) AT3G17220 82 / 5e-20 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT1G11362 54 / 4e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G55770 53 / 5e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G24640 52 / 1e-08 APPB1 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G02250 52 / 1e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17225 49 / 3e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G27999 48 / 4e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G50325 47 / 9e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G03945 47 / 2e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001658 [exp] 160 / 3e-50 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10017347 [exp] 152 / 2e-47 AT3G17220 81 / 2e-19 pectin methylesterase inhibitor 2 (.1) Lus10017345 [exp] 145 / 2e-44 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10017346 [exp] 114 / 4e-32 AT3G17220 79 / 8e-19 pectin methylesterase inhibitor 2 (.1) Lus10001659 [exp] 103 / 6e-28 AT1G48020 51 / 3e-08 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10023114 [exp] 89 / 3e-22 AT3G17220 60 / 2e-11 pectin methylesterase inhibitor 2 (.1) Lus10008201 [exp] 61 / 8e-12 AT4G02250 113 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001464 [exp] 57 / 2e-10 AT4G02250 112 / 1e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10019498 [exp] 56 / 6e-10 AT5G46970 87 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G016500 [exp] 68 / 2e-14 AT4G02250 73 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G044100 [exp] 67 / 3e-14 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G127500 [exp] 66 / 2e-13 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086600 [exp] 63 / 2e-12 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G134900 [exp] 57 / 3e-10 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.003G086500 [exp] 50 / 1e-07 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 48 / 5e-07 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 48 / 6e-07 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G067100 [exp] 48 / 1e-06 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 44 / 3e-05 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10041650 pacid=23147074 polypeptide=Lus10041650 locus=Lus10041650.g ID=Lus10041650.BGIv1.0 annot-version=v1.0 ATGGCGACGACGTTCGACTCCTCTTTCTTCTGTCTCCTGATGATTCTTATTCCTTCCGCCGCAGCCATCACCGCTCCGGAAATCTCCGCCATATGCGACA AGAGCATGAACCGTAACTTCTGCGCCAACTTCCTGCAATCCACTCCCGGGATATCCACCGCCGGTGACATCGCCGGCGTCGGAGGGATCGTCCTCGACGT CAGCAGCAAGAAGGCGGAGGAAACCAAGGAGTACGTCAAGACGACCCTGCTTGGTAATAAGGCCACGGACCCCAGGGTGAAGGCGGCGTACGAGACTTGT TTGGAGAACTACGACGACGCCGTTAGCGATATTTCCGATGCTAAGGCTGCGTTGGGATCCAAGGACAACGAAGGTGCGAATCTCCAGGCGTCGGCTGCCC AGACGGAGATGGACACTTGCGGGGATGAGATGGTGAACAAAGGAACGACGTCGTCGGAGCTTCCGGAGAGGAATCAGTATTTGTTCGATGTTCTCGATAT TGTTCTTGTAATTGCTAATAAGTTGAACGCTAATTGA
AA sequence Show only first row Show all	>Lus10041650 pacid=23147074 polypeptide=Lus10041650 locus=Lus10041650.g ID=Lus10041650.BGIv1.0 annot-version=v1.0 MATTFDSSFFCLLMILIPSAAAITAPEISAICDKSMNRNFCANFLQSTPGISTAGDIAGVGGIVLDVSSKKAEETKEYVKTTLLGNKATDPRVKAAYETC LENYDDAVSDISDAKAALGSKDNEGANLQASAAQTEMDTCGDEMVNKGTTSSELPERNQYLFDVLDIVLVIANKLNAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10041650 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10033098 [exp]	1.7	0.7464
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10013315 [exp]	48.5	0.6749
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10040424 [exp]	56.7	0.6494
AT3G05725			Protein of unknown function (D...		Lus10010929 [exp]	57.2	0.7093

Compare expression of checked genes

Lus10041650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.