Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15950 533 / 0 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 506 / 0 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT5G19440 324 / 4e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 300 / 1e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 287 / 1e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 276 / 1e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 277 / 4e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 275 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 274 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G33590 273 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024068 [exp] 699 / 0 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 507 / 0 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10035369 [exp] 496 / 1e-177 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 320 / 8e-109 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 307 / 2e-103 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 305 / 1e-102 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 281 / 2e-93 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 281 / 4e-93 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 267 / 1e-87 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181400 [exp] 572 / 0 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 571 / 0 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 569 / 0 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 562 / 0 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 549 / 0 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 543 / 0 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045800 [exp] 393 / 3e-138 AT1G15950 350 / 1e-121 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 319 / 4e-108 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 313 / 4e-106 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 305 / 1e-102 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10041651 pacid=23146902 polypeptide=Lus10041651 locus=Lus10041651.g ID=Lus10041651.BGIv1.0 annot-version=v1.0 ATGCCGGCTGACAGCTCATCCTTACCTGGCCACGGCCAGACCATCTGCGTCACCGGCGCCGGCGGCTTCATTGCCTCCTGGATGGTTAAGCTTCTTCTCG AAAGAGGCTACTCTGTCAAAGGAACTGTCAGGAATCCAGATGATCCGAAGAACAGTCATTTGAGAGAACTGGAAGGAGCTAGCGAGCGGCTGACTCTGTG CAAAGCCGATCTTCTCGACTATGAGAGCCTCCGAGAAGCCATTACCGGCTGCCAGGGCGTTTTCCACACCGCTTCCCCTGTCACCGACGATCCAGAACAA ATGGTGGAGCCGGCTGTGGTTGGTACGAAGAATGTAATTAATGCTGCAGCTGAAGCCCAAGTCCGGCGGGTTGTGTTCACGTCATCAATTGGCGCTGTCT ACATGGACCCCAACCGGAGCCCGGACGTCGTCGTGGATGAATCTTGTTGGAGCGATCTGGAGTTTTGCAAAAACACCAAGAATTGGTACTGTTATGGGAA GATGGTGGCGGAGCAGGCGGCATGGGAGACAGCGAAGGAGAAGGGAGTGGATGTAGTGGCGGTGAACCCGGTTCTGGTAATGGGACCATTGTTGCAATCA ACCATCAACGCCAGCACAATTCACATCCTCAAGTACCTAACTGGTTCTGCCAAGACTTACGCCAATTCGGTTCAAGCCTATGTTGATGTCAGGGACGTGG CACTAGCTCACATTATTGTCTTCGAGAACCCAGCGGCTTCCGGCCGGTACCTTTGCGCCGAGAGTGTGCTCCACCGTGGTGAGGTTGTCGAAATCCTGGC CAAGTTATTCCCCGAGTATCCTGTCCCCACCAAGTGTTCAGATGAGAAGAACCCAAGAGCAAAGGCATACAAGTTCTCATGCCAAAAACTCAAGGACTTG GGACTGGAATTCACACCAACGAAGCAGAGCCTGTATGAAGCAGTCAAGTCCCTTGAGGAAAAGGGTCATCTTTCTCCCCCTAAACAACAGCAGCACAAGG AGGAGGAACCCATCAAAATTCAGTCCTCTTCTTAA
AA sequence Show only first row Show all	>Lus10041651 pacid=23146902 polypeptide=Lus10041651 locus=Lus10041651.g ID=Lus10041651.BGIv1.0 annot-version=v1.0 MPADSSSLPGHGQTICVTGAGGFIASWMVKLLLERGYSVKGTVRNPDDPKNSHLRELEGASERLTLCKADLLDYESLREAITGCQGVFHTASPVTDDPEQ MVEPAVVGTKNVINAAAEAQVRRVVFTSSIGAVYMDPNRSPDVVVDESCWSDLEFCKNTKNWYCYGKMVAEQAAWETAKEKGVDVVAVNPVLVMGPLLQS TINASTIHILKYLTGSAKTYANSVQAYVDVRDVALAHIIVFENPAASGRYLCAESVLHRGEVVEILAKLFPEYPVPTKCSDEKNPRAKAYKFSCQKLKDL GLEFTPTKQSLYEAVKSLEEKGHLSPPKQQQHKEEEPIKIQSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	0	1
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	1.4	0.9727
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	1.4	0.9753
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	1.7	0.9712
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	2.2	0.9653
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	3.5	0.9613
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	3.7	0.9557
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	4.9	0.9678
					Lus10017792 [exp]	7.9	0.9013
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	8.5	0.9504
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10022453 [exp]	9.2	0.9443

Compare expression of checked genes

Lus10041651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.