Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10930 464 / 3e-163 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 456 / 2e-159 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT2G25090 409 / 3e-141 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 391 / 8e-135 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 371 / 9e-127 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G58380 355 / 7e-120 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT1G30270 349 / 1e-117 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 340 / 2e-114 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G01810 335 / 5e-113 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G07070 325 / 2e-108 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024075 [exp] 635 / 0 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10024448 [exp] 471 / 2e-165 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 467 / 4e-164 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10022749 [exp] 388 / 3e-133 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 380 / 5e-130 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10008582 [exp] 368 / 4e-126 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 369 / 9e-126 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 366 / 6e-125 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 362 / 7e-123 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181900 [exp] 481 / 1e-169 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G263500 [exp] 480 / 2e-169 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G019900 [exp] 474 / 5e-167 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.006G186200 [exp] 390 / 3e-134 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 388 / 3e-133 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 374 / 6e-128 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.013G156000 [exp] 374 / 1e-127 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 373 / 1e-127 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 366 / 9e-125 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 364 / 5e-124 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041653 pacid=23147073 polypeptide=Lus10041653 locus=Lus10041653.g ID=Lus10041653.BGIv1.0 annot-version=v1.0 ATGGCCACCAAGTCCAAAATCTTCTTCGTCATGGAGTATGTCAGAGGCGGCGAGCTGTTCGCCAAGGTCGAGAAAGGGAAGCTCGACGAGGACGTCGCTC GCAAGTACTTCCAACAATTAATCAGCGCAATCGATTACTGCCACAGCCGCGGCGTCTCTCATCGGGATCTGAAGCCGGAGAATCTGCTTCTGGACGAGAA CGGCAGTCTTAAGGTCTCCGATTTCGGCCTCTCTGCTTTGCCGGAACAGATCTGGAACGACGGATTGCTCCACACCCAATGTGGGACCCCTGCCTACGTG GCACCGGAGGTTCTGAGGAAAAAGGGGTACGACGGAGCTAAGGCAGATATTTGGTCCTGCGGTGTAATCCTCTTCGTCCTCCTCTCCGGATACCTACCAT TCCTCCACGAGAATTTAATGAAAATGTATGTGAAGATTTTCAAAGCGGATTACAAATTTCCTTCGTGGATCTCTAAGGACGCTAGGGCTTTGATCTCGAG GCATCTGGTTGTTGACGCGAGGAGGCGAATCACGATTGCAGAGATAATGGAGAATCCGTGGTTCAAGGAAGGGCTTCAGAAGCCAGTGACTGTTCCGGCG GCGTTTCCGGAGGAGGAGGAAGGAGGAGGAGGCGGATCGTCGTCGTCTGCTTCTTCGCCGCACTCGCCGCCGTTCTTCAACGCGTTCGATCTGATTTCTT CAATGTCGTCGGGATTCGATCTGTCGAATTTGTTCGAGGAGAAGAAGAAGCCAGGGTCGATGTTCACGACCAAGTGCGCGGCGCCGGTGATAATGTCGAA GCTGGAGACGGTGGCGAAAGAGTCGAATTTCAGAGTGGTGAGCGACGAGGACTACAAGGTGAAGATACAGGGGAAGGCGGAGGGGAGGAAAGGGGTGCTG GCGGTGACGGCGGAGGTGTACTCGGTGGCGCCGGAGGTGGCGGTGGTGGAGTTCTCGAAGAGGTCAGGGGATACGCTGGAATACGATAGGTTCTGCGAGG AGGAAGTGAAGCCGGCGCTGAAGGATGTGGTTTGGACGTGGCAGGGTGAAAGCAGCGACGAGGAATCATCTCGTCAGTTGTAG
AA sequence Show only first row Show all	>Lus10041653 pacid=23147073 polypeptide=Lus10041653 locus=Lus10041653.g ID=Lus10041653.BGIv1.0 annot-version=v1.0 MATKSKIFFVMEYVRGGELFAKVEKGKLDEDVARKYFQQLISAIDYCHSRGVSHRDLKPENLLLDENGSLKVSDFGLSALPEQIWNDGLLHTQCGTPAYV APEVLRKKGYDGAKADIWSCGVILFVLLSGYLPFLHENLMKMYVKIFKADYKFPSWISKDARALISRHLVVDARRRITIAEIMENPWFKEGLQKPVTVPA AFPEEEEGGGGGSSSSASSPHSPPFFNAFDLISSMSSGFDLSNLFEEKKKPGSMFTTKCAAPVIMSKLETVAKESNFRVVSDEDYKVKIQGKAEGRKGVL AVTAEVYSVAPEVAVVEFSKRSGDTLEYDRFCEEEVKPALKDVVWTWQGESSDEESSRQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	0	1
AT2G37900			Major facilitator superfamily ...		Lus10024340 [exp]	1.4	0.9644
AT1G47410			unknown protein		Lus10009767 [exp]	1.4	0.9622
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	1.7	0.9567
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	4.2	0.9197
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	4.2	0.9339
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	4.9	0.9365
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	5.9	0.9438
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	6.5	0.9159
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	6.9	0.9144
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	7.5	0.9180

Compare expression of checked genes

Lus10041653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.