Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 163 / 3e-50 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 159 / 2e-48 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29480 154 / 1e-46 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT1G74590 151 / 3e-45 ATGSTU10 glutathione S-transferase TAU 10 (.1) AT2G29450 150 / 5e-45 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT1G59700 149 / 1e-44 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT5G62480 147 / 8e-44 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT2G29470 147 / 9e-44 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT1G10370 145 / 4e-43 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT2G29490 142 / 4e-42 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001491 [exp] 323 / 4e-113 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10007897 [exp] 268 / 3e-91 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 186 / 4e-59 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 183 / 1e-57 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10007896 [exp] 177 / 2e-55 AT2G29490 171 / 2e-53 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Lus10016469 [exp] 171 / 3e-53 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10035241 [exp] 167 / 8e-52 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 166 / 5e-51 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040727 [exp] 160 / 1e-48 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G072400 [exp] 249 / 4e-84 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.016G023200 [exp] 244 / 9e-82 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 242 / 3e-81 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 224 / 3e-74 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 196 / 5e-63 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.012G052200 [exp] 196 / 6e-63 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 193 / 7e-62 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.015G042000 [exp] 192 / 2e-61 AT2G29460 197 / 7e-64 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) Potri.010G070900 [exp] 189 / 2e-60 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061600 [exp] 177 / 8e-56 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041654 pacid=23146922 polypeptide=Lus10041654 locus=Lus10041654.g ID=Lus10041654.BGIv1.0 annot-version=v1.0 ATGGCAGCAAAAGAAGAAGTGAAGCTTTACAAGACATGGTCAAGCCTATTTGCTCTGAGGGTGGTTTGGGCACTCAAACTCAAAGGCATACCCTACGATT CCTTTGACGAAGACCTCGCCAAGAAGAGTGATTCGCTTCTCAATCATAACCCTGTCCACAAAAAAGTCCCTGTTCTCCTCCACAACGGAAGATCCATCTC CGAATCCCTCGTCATTCTTGAATACATCGACGAGACCTGGAACCAAGACCCACCTGCACTTTTCCCTCAAGATCCACTCCAGAGGGCCGCCGCCCGCTTC TGGTCCAAATTCGGAGATGAAACTGTGCTTCCGTCAGTGTGGAAGGCATTCACTACGGAAGGGAAAGAGCATGAGCAGGGGTTAGCTACAATTGCAGAGA ATTTGACACTGCTGGAAGAAGAGTTGAATGGAAAGAAATTCTTCTCTGGAGAAGATCAGCTTGGGATTGTGGACATTGCTCTGGGTTGGGTAGCGAACTT GGTCCCTGTCTACGAAGAGATTCTTGGTTTGAAAGTGTTGGACAAGGAGAATTATCCATCCTTGTGGGAATGGATGCAACGGATTTCGAATGCCCCTGTG ATCAAAGAGAGCTGGCCTCGTCATGAACAACTCGTCACCAAATGGACCGACCTTCGCCGCAGATTCCTCCTCGCAAAGGCAGCGACGGATGCATCATCAT CGTCCAATTAA
AA sequence Show only first row Show all	>Lus10041654 pacid=23146922 polypeptide=Lus10041654 locus=Lus10041654.g ID=Lus10041654.BGIv1.0 annot-version=v1.0 MAAKEEVKLYKTWSSLFALRVVWALKLKGIPYDSFDEDLAKKSDSLLNHNPVHKKVPVLLHNGRSISESLVILEYIDETWNQDPPALFPQDPLQRAAARF WSKFGDETVLPSVWKAFTTEGKEHEQGLATIAENLTLLEEELNGKKFFSGEDQLGIVDIALGWVANLVPVYEEILGLKVLDKENYPSLWEWMQRISNAPV IKESWPRHEQLVTKWTDLRRRFLLAKAATDASSSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	0	1
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	1.4	0.9099
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	5.5	0.8787
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	9.2	0.8893
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	9.5	0.8774
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	9.6	0.9006
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	9.9	0.8669
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	12.1	0.8756
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	14.4	0.8734
AT5G20950			Glycosyl hydrolase family prot...		Lus10010657 [exp]	14.5	0.8480
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037768 [exp]	14.7	0.8574

Compare expression of checked genes

Lus10041654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.