Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29590 254 / 1e-79 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39090 244 / 8e-76 HXXXD-type acyl-transferase family protein (.1) AT5G39080 232 / 7e-71 HXXXD-type acyl-transferase family protein (.1) AT3G29670 228 / 1e-69 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29635 224 / 9e-68 HXXXD-type acyl-transferase family protein (.1) AT5G61160 221 / 1e-66 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39050 218 / 2e-65 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29680 198 / 5e-58 HXXXD-type acyl-transferase family protein (.1) AT1G03495 171 / 6e-48 HXXXD-type acyl-transferase family protein (.1) AT1G03940 166 / 5e-46 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041658 [exp] 583 / 0 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10041656 [exp] 459 / 2e-160 AT3G29590 242 / 6e-76 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 295 / 6e-95 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 283 / 3e-90 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041657 [exp] 272 / 3e-89 AT3G29590 143 / 3e-40 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 276 / 7e-88 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 269 / 6e-85 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 269 / 8e-85 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 258 / 1e-80 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 338 / 8e-112 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 326 / 4e-107 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 324 / 2e-106 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 306 / 3e-99 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 304 / 1e-98 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 303 / 3e-98 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 303 / 3e-98 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 302 / 1e-97 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 298 / 2e-96 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.009G019700 [exp] 287 / 6e-92 AT3G29590 304 / 1e-98 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10041655 pacid=23146788 polypeptide=Lus10041655 locus=Lus10041655.g ID=Lus10041655.BGIv1.0 annot-version=v1.0 ATGGAGGAGTCGGCATCCCAAGTCACCACCGTCACTGCCCGAGAGCTCTGCCGCATCTCCCCATCGTCCTCCAACTCAACAACCACCAATGCCGCTACTT TCCCACTCTCTATCTTCGGCCTCTTCTGGTTTCGTAGCCCACCAGTTCAGCGACTCTTCTTCTACTCCATCCCCCCATCTTCCTCCGCCGCCAATGTCTT CTACTCCGACATCCTCCCAACCCTCAAACTCTCACTCTCCGCCGCCCTATCCTACTTCTACCCACTAGCCGCCTCCCTCATTTGGCCCTCCGATTCCCAG AACCCATTCCTCCTCTACGACTCCTCCGCTGCCTCCGGCGTCTACCTCACCATTGCCGAATCGGCCGCCGATTTCAACGGCCTAGCCTCTGGCCAAATCC GCAGCTCCCATGAATCTCATCCTTACATCCCTGTCTTGCCCTCTTTCGATTCGGAGGCCGCCGTTATAGCTCTCCAAATCACTCTGTTTCCCAACCAAGG TTTTTGCATCGGGGTGTCCAACCACCCCGCCATACTCGACGGAAAATCGGTCACTCTTTTTCTCAAGGCTTGGGCCCACCTGTCCAACGCCGTTGTTGGC GTCGTCTCCTCGCCACTGCCGAAAGAACTGACTCCGTTTCTAGACCGGTCAATAGTCCACGACCCGAGTTGGTCAGAACGGGCGTACATAGACTTATGGA CCGGGATGAATCATCCGGGTATGGGTAAACCTGACCCGAGAAGTACTCCGGCCGACTCGGTCCGAGCTACATTCCTCATCTCCGAGGAAAGAATTCACAC GCTCCGGGAAGTGGTAACGATGATGAACTACAGTGACAATAAGACGATCCGGTCACCGAGCTTTTCCCTAGCCTTTGCACATTCCATCGTTTGCTTGGTA AGAGCCAAACGGCTCGGAATCGGAAGGGACGTCGATAGGAAAGTAGTTCATGTTGGTTTTACGGCGGATGCAAGGTGGCGCGTGAAACCTCCTCTCCCAG CGAATTACCTAGGGAATTGCGACGTCTGTTGTCATGATCTGATCGAAATCGAGCCTTTGGTAGAAGAAGAAGGATTTGGCGGGAGAGGGTTTAGATTTGC GGTGGAGAAGATCAGTAGAATGATTGATGAGGTGGAAGAGAATGCGGCAGCGGTGAAAAAGGACGATTTGTTAAGATTCGAGGGGAATCTGGAAACGAGC AGAGGAGTGTTCCTCGGGGTTGCTGGGTCCCCTAAGTCCCAAGTGTACGGAAATGATTTCGGATGGGGGAGGCCGAAATTGGTGGAGATCACGTCGATTG ATCGGACGGGTGCAATTTCGCTAGCGGAGTGCCGGAATGGGAGCCATGGGATCGAGGTTGGATTGGCTTTGACGCCTATTGAAATGGAACTCTTCTGCTC TGCCTTTGAAGCCTAA
AA sequence Show only first row Show all	>Lus10041655 pacid=23146788 polypeptide=Lus10041655 locus=Lus10041655.g ID=Lus10041655.BGIv1.0 annot-version=v1.0 MEESASQVTTVTARELCRISPSSSNSTTTNAATFPLSIFGLFWFRSPPVQRLFFYSIPPSSSAANVFYSDILPTLKLSLSAALSYFYPLAASLIWPSDSQ NPFLLYDSSAASGVYLTIAESAADFNGLASGQIRSSHESHPYIPVLPSFDSEAAVIALQITLFPNQGFCIGVSNHPAILDGKSVTLFLKAWAHLSNAVVG VVSSPLPKELTPFLDRSIVHDPSWSERAYIDLWTGMNHPGMGKPDPRSTPADSVRATFLISEERIHTLREVVTMMNYSDNKTIRSPSFSLAFAHSIVCLV RAKRLGIGRDVDRKVVHVGFTADARWRVKPPLPANYLGNCDVCCHDLIEIEPLVEEEGFGGRGFRFAVEKISRMIDEVEENAAAVKKDDLLRFEGNLETS RGVFLGVAGSPKSQVYGNDFGWGRPKLVEITSIDRTGAISLAECRNGSHGIEVGLALTPIEMELFCSAFEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	0	1
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	1.0	0.9713
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	1.4	0.9520
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10000450 [exp]	4.5	0.8963
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	4.6	0.9397
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	7.7	0.9067
					Lus10011725 [exp]	8.3	0.8768
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10032094 [exp]	8.7	0.8654
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	8.8	0.8927
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	8.9	0.9203
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10043010 [exp]	8.9	0.8860

Compare expression of checked genes

Lus10041655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.